Hb_003879_020

Information

Type -
Description -
Location Contig3879: 10955-16531
Sequence    

Annotation

kegg
ID pop:POPTR_0016s05400g
description POPTRDRAFT_907867; hypothetical protein
nr
ID XP_012086110.1
description PREDICTED: MATE efflux family protein 1-like [Jatropha curcas]
swissprot
ID Q9SYD6
description MATE efflux family protein 1 OS=Arabidopsis thaliana GN=MATE PE=2 SV=2
trembl
ID A0A067JT65
description MATE efflux family protein OS=Jatropha curcas GN=JCGZ_21051 PE=3 SV=1
Gene Ontology
ID GO:0016021
description mate efflux family protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38913: 10861-11517 , PASA_asmbl_38914: 11811-15071
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003879_020 0.0 - - PREDICTED: MATE efflux family protein 1-like [Jatropha curcas]
2 Hb_001439_010 0.1047195838 - - PREDICTED: anthocyanidin 3-O-glucosyltransferase 5-like [Jatropha curcas]
3 Hb_000398_140 0.1118222727 - - PREDICTED: methionine S-methyltransferase [Jatropha curcas]
4 Hb_000731_210 0.1120152441 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003607_140 0.1140953942 - - 3-ketoacyl-CoA thiolase B, putative [Ricinus communis]
6 Hb_000210_040 0.1185427603 - - PREDICTED: putative HVA22-like protein g [Jatropha curcas]
7 Hb_010174_180 0.1208170724 - - protein binding protein, putative [Ricinus communis]
8 Hb_000024_130 0.1233942468 - - conserved hypothetical protein [Ricinus communis]
9 Hb_006469_090 0.1246941414 - - PREDICTED: LOW QUALITY PROTEIN: myosin-11 [Jatropha curcas]
10 Hb_000077_400 0.1257149891 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
11 Hb_001189_100 0.1273895687 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 2-like [Jatropha curcas]
12 Hb_002316_020 0.1282865491 - - PREDICTED: uncharacterized protein LOC105640407 [Jatropha curcas]
13 Hb_022250_160 0.1291904913 - - respiratory burst oxidase A [Manihot esculenta]
14 Hb_004079_100 0.1293448144 - - PREDICTED: uncharacterized protein LOC105637705 [Jatropha curcas]
15 Hb_000003_020 0.1310786591 - - PREDICTED: uncharacterized protein LOC105631161 [Jatropha curcas]
16 Hb_008066_080 0.1338254257 - - PREDICTED: GDSL esterase/lipase 1-like [Jatropha curcas]
17 Hb_008695_150 0.1355799088 - - PREDICTED: beta-1,3-galactosyltransferase 7 isoform X1 [Jatropha curcas]
18 Hb_000042_380 0.1373633088 - - PREDICTED: uncharacterized membrane protein At3g27390 [Jatropha curcas]
19 Hb_010672_050 0.1376732658 - - PREDICTED: probable beta-1,3-galactosyltransferase 2 isoform X3 [Jatropha curcas]
20 Hb_007416_290 0.137838691 - - PREDICTED: plasma membrane ATPase 4-like [Pyrus x bretschneideri]

Gene co-expression network

sample Hb_003879_020 Hb_003879_020 Hb_001439_010 Hb_001439_010 Hb_003879_020--Hb_001439_010 Hb_000398_140 Hb_000398_140 Hb_003879_020--Hb_000398_140 Hb_000731_210 Hb_000731_210 Hb_003879_020--Hb_000731_210 Hb_003607_140 Hb_003607_140 Hb_003879_020--Hb_003607_140 Hb_000210_040 Hb_000210_040 Hb_003879_020--Hb_000210_040 Hb_010174_180 Hb_010174_180 Hb_003879_020--Hb_010174_180 Hb_006469_090 Hb_006469_090 Hb_001439_010--Hb_006469_090 Hb_000680_070 Hb_000680_070 Hb_001439_010--Hb_000680_070 Hb_005663_090 Hb_005663_090 Hb_001439_010--Hb_005663_090 Hb_001439_010--Hb_003607_140 Hb_004032_110 Hb_004032_110 Hb_001439_010--Hb_004032_110 Hb_004421_010 Hb_004421_010 Hb_000398_140--Hb_004421_010 Hb_059000_010 Hb_059000_010 Hb_000398_140--Hb_059000_010 Hb_001141_160 Hb_001141_160 Hb_000398_140--Hb_001141_160 Hb_001189_100 Hb_001189_100 Hb_000398_140--Hb_001189_100 Hb_004122_060 Hb_004122_060 Hb_000398_140--Hb_004122_060 Hb_012743_020 Hb_012743_020 Hb_000398_140--Hb_012743_020 Hb_002301_370 Hb_002301_370 Hb_000731_210--Hb_002301_370 Hb_000024_130 Hb_000024_130 Hb_000731_210--Hb_000024_130 Hb_001048_100 Hb_001048_100 Hb_000731_210--Hb_001048_100 Hb_031385_010 Hb_031385_010 Hb_000731_210--Hb_031385_010 Hb_000318_170 Hb_000318_170 Hb_000731_210--Hb_000318_170 Hb_003106_230 Hb_003106_230 Hb_000731_210--Hb_003106_230 Hb_003607_140--Hb_010174_180 Hb_003607_140--Hb_006469_090 Hb_002635_020 Hb_002635_020 Hb_003607_140--Hb_002635_020 Hb_002316_020 Hb_002316_020 Hb_003607_140--Hb_002316_020 Hb_003607_140--Hb_000210_040 Hb_007894_070 Hb_007894_070 Hb_000210_040--Hb_007894_070 Hb_006414_010 Hb_006414_010 Hb_000210_040--Hb_006414_010 Hb_000210_040--Hb_004421_010 Hb_000659_040 Hb_000659_040 Hb_000210_040--Hb_000659_040 Hb_010174_180--Hb_002316_020 Hb_010174_180--Hb_031385_010 Hb_010174_180--Hb_002635_020 Hb_001675_270 Hb_001675_270 Hb_010174_180--Hb_001675_270 Hb_010174_180--Hb_000731_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0237004 1.73275 2.97593 3.51694 0.0105933 0.029747
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0480979 0.302752 0.250775 3.31419 2.55485

CAGE analysis