Hb_003880_030

Information

Type -
Description -
Location Contig3880: 53290-60149
Sequence    

Annotation

kegg
ID rcu:RCOM_0811440
description hypothetical protein
nr
ID XP_012075811.1
description PREDICTED: protein TIC 21, chloroplastic [Jatropha curcas]
swissprot
ID Q9SHU7
description Protein TIC 21, chloroplastic OS=Arabidopsis thaliana GN=TIC21 PE=1 SV=1
trembl
ID A0A067LF83
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15453 PE=4 SV=1
Gene Ontology
ID GO:0009941
description protein tic chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38927: 53325-60146 , PASA_asmbl_38928: 53325-59518 , PASA_asmbl_38929: 58450-58848 , PASA_asmbl_38930: 56321-56586
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003880_030 0.0 - - PREDICTED: protein TIC 21, chloroplastic [Jatropha curcas]
2 Hb_000673_020 0.0651530564 - - PREDICTED: ATP synthase subunit delta', mitochondrial [Jatropha curcas]
3 Hb_000384_120 0.0696665208 transcription factor TF Family: Whirly PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial [Jatropha curcas]
4 Hb_072922_020 0.0821786688 - - SNARE-like superfamily protein [Theobroma cacao]
5 Hb_001979_020 0.0831715119 - - hypothetical protein OsJ_31823 [Oryza sativa Japonica Group]
6 Hb_001329_150 0.0839284721 - - PREDICTED: autophagy-related protein 8i-like [Jatropha curcas]
7 Hb_000922_040 0.0851531955 - - PREDICTED: CASP-like protein 4A3 [Jatropha curcas]
8 Hb_002016_080 0.0861250541 - - PREDICTED: thiamine pyrophosphokinase 1 isoform X1 [Jatropha curcas]
9 Hb_000175_030 0.0869066527 - - Signal recognition particle, SRP54 subunit protein [Theobroma cacao]
10 Hb_001053_140 0.0871589309 - - PREDICTED: ATP synthase subunit O, mitochondrial [Jatropha curcas]
11 Hb_013405_140 0.0883400112 - - PREDICTED: uncharacterized protein LOC105648437 [Jatropha curcas]
12 Hb_027654_050 0.0899254518 - - PREDICTED: uncharacterized protein LOC105646592 [Jatropha curcas]
13 Hb_000571_020 0.0909592311 - - PREDICTED: BAG family molecular chaperone regulator 4 isoform X1 [Jatropha curcas]
14 Hb_007037_020 0.0909708791 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 78 [Jatropha curcas]
15 Hb_000224_140 0.0910615213 - - ribonuclease z, chloroplast, putative [Ricinus communis]
16 Hb_003291_020 0.0915791521 - - PREDICTED: ATP synthase subunit delta', mitochondrial [Jatropha curcas]
17 Hb_002304_160 0.0927880483 - - PREDICTED: nudix hydrolase 15, mitochondrial-like isoform X1 [Jatropha curcas]
18 Hb_000056_070 0.0933317336 - - -
19 Hb_011485_020 0.0940549104 - - protein with unknown function [Ricinus communis]
20 Hb_000254_050 0.0948118862 - - hypothetical protein VITISV_010510 [Vitis vinifera]

Gene co-expression network

sample Hb_003880_030 Hb_003880_030 Hb_000673_020 Hb_000673_020 Hb_003880_030--Hb_000673_020 Hb_000384_120 Hb_000384_120 Hb_003880_030--Hb_000384_120 Hb_072922_020 Hb_072922_020 Hb_003880_030--Hb_072922_020 Hb_001979_020 Hb_001979_020 Hb_003880_030--Hb_001979_020 Hb_001329_150 Hb_001329_150 Hb_003880_030--Hb_001329_150 Hb_000922_040 Hb_000922_040 Hb_003880_030--Hb_000922_040 Hb_013405_140 Hb_013405_140 Hb_000673_020--Hb_013405_140 Hb_000175_030 Hb_000175_030 Hb_000673_020--Hb_000175_030 Hb_027654_050 Hb_027654_050 Hb_000673_020--Hb_027654_050 Hb_000934_190 Hb_000934_190 Hb_000673_020--Hb_000934_190 Hb_002016_080 Hb_002016_080 Hb_000673_020--Hb_002016_080 Hb_000384_120--Hb_072922_020 Hb_000417_260 Hb_000417_260 Hb_000384_120--Hb_000417_260 Hb_000384_120--Hb_000922_040 Hb_005269_080 Hb_005269_080 Hb_000384_120--Hb_005269_080 Hb_002324_010 Hb_002324_010 Hb_000384_120--Hb_002324_010 Hb_005463_140 Hb_005463_140 Hb_072922_020--Hb_005463_140 Hb_000087_130 Hb_000087_130 Hb_072922_020--Hb_000087_130 Hb_000302_280 Hb_000302_280 Hb_072922_020--Hb_000302_280 Hb_000254_050 Hb_000254_050 Hb_072922_020--Hb_000254_050 Hb_000789_230 Hb_000789_230 Hb_072922_020--Hb_000789_230 Hb_002232_060 Hb_002232_060 Hb_001979_020--Hb_002232_060 Hb_003020_150 Hb_003020_150 Hb_001979_020--Hb_003020_150 Hb_005054_260 Hb_005054_260 Hb_001979_020--Hb_005054_260 Hb_000072_200 Hb_000072_200 Hb_001979_020--Hb_000072_200 Hb_001979_020--Hb_000384_120 Hb_001053_140 Hb_001053_140 Hb_001329_150--Hb_001053_140 Hb_000419_070 Hb_000419_070 Hb_001329_150--Hb_000419_070 Hb_000571_020 Hb_000571_020 Hb_001329_150--Hb_000571_020 Hb_002000_140 Hb_002000_140 Hb_001329_150--Hb_002000_140 Hb_002303_060 Hb_002303_060 Hb_001329_150--Hb_002303_060 Hb_000189_240 Hb_000189_240 Hb_001329_150--Hb_000189_240 Hb_000922_040--Hb_005269_080 Hb_001222_080 Hb_001222_080 Hb_000922_040--Hb_001222_080 Hb_000922_040--Hb_002016_080 Hb_000701_100 Hb_000701_100 Hb_000922_040--Hb_000701_100 Hb_001410_060 Hb_001410_060 Hb_000922_040--Hb_001410_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.36377 8.15951 12.8516 17.7991 5.59489 7.56349
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
32.1533 46.4387 25.6398 16.9955 18.5503

CAGE analysis