Hb_003880_040

Information

Type -
Description -
Location Contig3880: 62529-63894
Sequence    

Annotation

kegg
ID pop:POPTR_0001s30770g
description POPTRDRAFT_813614; hypothetical protein
nr
ID XP_002300239.1
description hypothetical protein POPTR_0001s30770g [Populus trichocarpa]
swissprot
ID Q9LT71
description Reticulon-like protein B11 OS=Arabidopsis thaliana GN=RTNLB11 PE=2 SV=1
trembl
ID B9GHE2
description Reticulon-like protein OS=Populus trichocarpa GN=POPTR_0001s30770g PE=4 SV=1
Gene Ontology
ID GO:0005789
description reticulon-like protein b11

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003880_040 0.0 - - hypothetical protein POPTR_0001s30770g [Populus trichocarpa]
2 Hb_001410_060 0.0853623511 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 8 homolog A-like [Jatropha curcas]
3 Hb_000563_200 0.0862902947 - - hypothetical protein JCGZ_18930 [Jatropha curcas]
4 Hb_000016_170 0.099698045 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000574_130 0.1089480355 - - calcineurin-like protein [Hevea brasiliensis]
6 Hb_003291_020 0.1110854234 - - PREDICTED: ATP synthase subunit delta', mitochondrial [Jatropha curcas]
7 Hb_005307_050 0.1114770179 - - PREDICTED: uncharacterized protein LOC105645274 [Jatropha curcas]
8 Hb_003106_100 0.1144229016 - - mannose-1-phosphate guanyltransferase, putative [Ricinus communis]
9 Hb_002631_260 0.1146812492 - - PREDICTED: proteasome subunit alpha type-2-A [Jatropha curcas]
10 Hb_000922_040 0.1179505339 - - PREDICTED: CASP-like protein 4A3 [Jatropha curcas]
11 Hb_005496_090 0.1201563625 - - PREDICTED: adenine phosphoribosyltransferase 1-like [Jatropha curcas]
12 Hb_001242_140 0.1202737956 - - mitochondrial carrier protein, putative [Ricinus communis]
13 Hb_148209_010 0.1202883458 - - RAS-related GTP-binding family protein [Populus trichocarpa]
14 Hb_002876_020 0.120394487 - - PREDICTED: maf-like protein DDB_G0281937 isoform X2 [Jatropha curcas]
15 Hb_001123_160 0.1210926265 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial isoform X2 [Jatropha curcas]
16 Hb_000685_050 0.1212378997 - - PREDICTED: mitochondrial inner membrane protein OXA1-like [Populus euphratica]
17 Hb_008232_010 0.1215238523 transcription factor TF Family: C2C2-GATA GATA transcription factor, putative [Ricinus communis]
18 Hb_000049_050 0.1215561926 - - PREDICTED: uncharacterized protein LOC105644474 [Jatropha curcas]
19 Hb_186982_040 0.1220701596 - - hypothetical protein PHAVU_003G089200g [Phaseolus vulgaris]
20 Hb_000384_120 0.1229810411 transcription factor TF Family: Whirly PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_003880_040 Hb_003880_040 Hb_001410_060 Hb_001410_060 Hb_003880_040--Hb_001410_060 Hb_000563_200 Hb_000563_200 Hb_003880_040--Hb_000563_200 Hb_000016_170 Hb_000016_170 Hb_003880_040--Hb_000016_170 Hb_000574_130 Hb_000574_130 Hb_003880_040--Hb_000574_130 Hb_003291_020 Hb_003291_020 Hb_003880_040--Hb_003291_020 Hb_005307_050 Hb_005307_050 Hb_003880_040--Hb_005307_050 Hb_000377_120 Hb_000377_120 Hb_001410_060--Hb_000377_120 Hb_001410_060--Hb_000563_200 Hb_000922_040 Hb_000922_040 Hb_001410_060--Hb_000922_040 Hb_005306_070 Hb_005306_070 Hb_001410_060--Hb_005306_070 Hb_005269_080 Hb_005269_080 Hb_001410_060--Hb_005269_080 Hb_145880_020 Hb_145880_020 Hb_000563_200--Hb_145880_020 Hb_001353_010 Hb_001353_010 Hb_000563_200--Hb_001353_010 Hb_148209_010 Hb_148209_010 Hb_000563_200--Hb_148209_010 Hb_001123_160 Hb_001123_160 Hb_000563_200--Hb_001123_160 Hb_005167_030 Hb_005167_030 Hb_000016_170--Hb_005167_030 Hb_005496_090 Hb_005496_090 Hb_000016_170--Hb_005496_090 Hb_008642_030 Hb_008642_030 Hb_000016_170--Hb_008642_030 Hb_002154_110 Hb_002154_110 Hb_000016_170--Hb_002154_110 Hb_000946_100 Hb_000946_100 Hb_000016_170--Hb_000946_100 Hb_000046_350 Hb_000046_350 Hb_000574_130--Hb_000046_350 Hb_000685_050 Hb_000685_050 Hb_000574_130--Hb_000685_050 Hb_001252_210 Hb_001252_210 Hb_000574_130--Hb_001252_210 Hb_000574_130--Hb_000563_200 Hb_000574_130--Hb_148209_010 Hb_003291_020--Hb_148209_010 Hb_003291_020--Hb_001123_160 Hb_000056_250 Hb_000056_250 Hb_003291_020--Hb_000056_250 Hb_000384_120 Hb_000384_120 Hb_003291_020--Hb_000384_120 Hb_003126_070 Hb_003126_070 Hb_003291_020--Hb_003126_070 Hb_003880_030 Hb_003880_030 Hb_003291_020--Hb_003880_030 Hb_000808_190 Hb_000808_190 Hb_005307_050--Hb_000808_190 Hb_007928_030 Hb_007928_030 Hb_005307_050--Hb_007928_030 Hb_186982_040 Hb_186982_040 Hb_005307_050--Hb_186982_040 Hb_000212_290 Hb_000212_290 Hb_005307_050--Hb_000212_290 Hb_008695_050 Hb_008695_050 Hb_005307_050--Hb_008695_050 Hb_001242_140 Hb_001242_140 Hb_005307_050--Hb_001242_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.200961 0.490971 0.789811 3.05259 0.630734 1.18053
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.32807 4.24529 2.19324 2.18443 1.71418

CAGE analysis