Hb_003881_050

Information

Type -
Description -
Location Contig3881: 102339-107928
Sequence    

Annotation

kegg
ID sot:102582478
description uncharacterized LOC102582478
nr
ID XP_009760879.1
description PREDICTED: uncharacterized protein LOC104213140 [Nicotiana sylvestris]
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 024_C05.ab1: 107604-120115 , 050_J16.ab1: 107548-120117

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003881_050 0.0 - - PREDICTED: uncharacterized protein LOC104213140 [Nicotiana sylvestris]
2 Hb_038011_010 0.2048498991 - - hypothetical protein POPTR_0031s004401g, partial [Populus trichocarpa]
3 Hb_001242_090 0.205819561 - - 40S ribosomal protein S18 [Colletotrichum fioriniae PJ7]
4 Hb_085863_020 0.2321699209 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 1 [Jatropha curcas]
5 Hb_073452_010 0.2332807846 - - PREDICTED: chaperonin CPN60-like 2, mitochondrial isoform X2 [Jatropha curcas]
6 Hb_090497_010 0.2342559576 - - PREDICTED: Werner Syndrome-like exonuclease [Jatropha curcas]
7 Hb_003688_160 0.2380572225 - - Presenilin-like family protein [Populus trichocarpa]
8 Hb_015707_010 0.2395173954 - - hypothetical protein JCGZ_09913 [Jatropha curcas]
9 Hb_002733_030 0.2401937982 - - PREDICTED: uncharacterized protein LOC104248159 [Nicotiana sylvestris]
10 Hb_000260_690 0.2409357474 - - disease resistance protein (CC-NBS-LRR class) family protein [Medicago truncatula]
11 Hb_176825_010 0.2462541252 - - PREDICTED: uncharacterized protein LOC105630857 isoform X2 [Jatropha curcas]
12 Hb_004899_060 0.2503901898 - - 46 kDa ketoavyl-ACP synthase [Ricinus communis]
13 Hb_001703_120 0.2550741451 - - PREDICTED: uncharacterized protein LOC105116966 isoform X2 [Populus euphratica]
14 Hb_001106_050 0.2574391812 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
15 Hb_010317_020 0.2576612485 - - PREDICTED: sarcoplasmic reticulum histidine-rich calcium-binding protein [Jatropha curcas]
16 Hb_003688_170 0.2582250693 - - PREDICTED: presenilin-like protein At2g29900 isoform X2 [Cucumis sativus]
17 Hb_010317_030 0.2586877926 - - unknown [Picea sitchensis]
18 Hb_004103_030 0.2648294216 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000251_090 0.2732664595 - - PREDICTED: two-pore potassium channel 3-like [Jatropha curcas]
20 Hb_000284_100 0.2747667818 - - PREDICTED: transcription factor GTE11 isoform X2 [Populus euphratica]

Gene co-expression network

sample Hb_003881_050 Hb_003881_050 Hb_038011_010 Hb_038011_010 Hb_003881_050--Hb_038011_010 Hb_001242_090 Hb_001242_090 Hb_003881_050--Hb_001242_090 Hb_085863_020 Hb_085863_020 Hb_003881_050--Hb_085863_020 Hb_073452_010 Hb_073452_010 Hb_003881_050--Hb_073452_010 Hb_090497_010 Hb_090497_010 Hb_003881_050--Hb_090497_010 Hb_003688_160 Hb_003688_160 Hb_003881_050--Hb_003688_160 Hb_038011_010--Hb_090497_010 Hb_038011_010--Hb_073452_010 Hb_048116_010 Hb_048116_010 Hb_038011_010--Hb_048116_010 Hb_011287_090 Hb_011287_090 Hb_038011_010--Hb_011287_090 Hb_099864_010 Hb_099864_010 Hb_038011_010--Hb_099864_010 Hb_002326_050 Hb_002326_050 Hb_038011_010--Hb_002326_050 Hb_001242_090--Hb_003688_160 Hb_001242_090--Hb_073452_010 Hb_000251_090 Hb_000251_090 Hb_001242_090--Hb_000251_090 Hb_052689_010 Hb_052689_010 Hb_001242_090--Hb_052689_010 Hb_003688_170 Hb_003688_170 Hb_001242_090--Hb_003688_170 Hb_022148_010 Hb_022148_010 Hb_085863_020--Hb_022148_010 Hb_000139_380 Hb_000139_380 Hb_085863_020--Hb_000139_380 Hb_170193_010 Hb_170193_010 Hb_085863_020--Hb_170193_010 Hb_127003_010 Hb_127003_010 Hb_085863_020--Hb_127003_010 Hb_001004_040 Hb_001004_040 Hb_085863_020--Hb_001004_040 Hb_085863_020--Hb_011287_090 Hb_000442_080 Hb_000442_080 Hb_073452_010--Hb_000442_080 Hb_000011_330 Hb_000011_330 Hb_073452_010--Hb_000011_330 Hb_073452_010--Hb_000251_090 Hb_002205_190 Hb_002205_190 Hb_073452_010--Hb_002205_190 Hb_008695_140 Hb_008695_140 Hb_073452_010--Hb_008695_140 Hb_000567_380 Hb_000567_380 Hb_073452_010--Hb_000567_380 Hb_004899_060 Hb_004899_060 Hb_090497_010--Hb_004899_060 Hb_000101_160 Hb_000101_160 Hb_090497_010--Hb_000101_160 Hb_000099_210 Hb_000099_210 Hb_090497_010--Hb_000099_210 Hb_012725_100 Hb_012725_100 Hb_090497_010--Hb_012725_100 Hb_003688_160--Hb_004899_060 Hb_003688_160--Hb_052689_010 Hb_174473_010 Hb_174473_010 Hb_003688_160--Hb_174473_010 Hb_003688_160--Hb_000251_090 Hb_089206_010 Hb_089206_010 Hb_003688_160--Hb_089206_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.937092 0.126838 0.510466 0.258523 0.797962 1.81248
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 3.26897 0.677073 0.727589

CAGE analysis