Hb_003884_040

Information

Type -
Description -
Location Contig3884: 46739-51224
Sequence    

Annotation

kegg
ID zma:103648418
description uncharacterized LOC103648418
nr
ID AAG13508.1
description putative gag-pol polyprotein [Oryza sativa Japonica Group]
swissprot
ID P0CT40
description Transposon Tf2-9 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-9 PE=3 SV=1
trembl
ID Q9FW76
description Putative gag-pol polyprotein OS=Oryza sativa subsp. japonica GN=OSJNBa0026L12.26 PE=4 SV=1
Gene Ontology
ID GO:0043170
description transposon tf2-1 polyprotein isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003884_040 0.0 - - putative gag-pol polyprotein [Oryza sativa Japonica Group]
2 Hb_002681_080 0.1388586012 - - PREDICTED: uncharacterized protein LOC105633817 isoform X1 [Jatropha curcas]
3 Hb_000495_080 0.1521350294 - - Pentatricopeptide repeat (PPR-like) superfamily protein [Theobroma cacao]
4 Hb_003878_080 0.1537844567 - - PREDICTED: uncharacterized protein LOC105637045 [Jatropha curcas]
5 Hb_005375_110 0.1591971963 - - metal tolerance protein 1 [Populus trichocarpa x Populus deltoides]
6 Hb_000521_090 0.1644315927 - - PREDICTED: RING-H2 finger protein ATL5 isoform X1 [Jatropha curcas]
7 Hb_000676_200 0.165029825 - - PREDICTED: CDK5RAP1-like protein [Jatropha curcas]
8 Hb_003475_020 0.1653109294 - - hypothetical protein JCGZ_13177 [Jatropha curcas]
9 Hb_000069_490 0.1672962235 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000661_090 0.167853197 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
11 Hb_000352_220 0.1701289838 - - PREDICTED: probable tyrosine--tRNA ligase, mitochondrial [Jatropha curcas]
12 Hb_000331_490 0.1709024981 - - PREDICTED: radical S-adenosyl methionine domain-containing protein 1, mitochondrial [Jatropha curcas]
13 Hb_003211_030 0.1724873375 - - -
14 Hb_003941_030 0.1742243887 - - Protease ecfE, putative [Ricinus communis]
15 Hb_010757_030 0.1746172797 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
16 Hb_002671_130 0.1749249674 - - GTP-binding protein typa/bipa, putative [Ricinus communis]
17 Hb_008511_140 0.1749970823 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105632314 [Jatropha curcas]
18 Hb_000056_090 0.1750185173 - - UDP-galactose transporter 3 isoform 1 [Theobroma cacao]
19 Hb_000683_080 0.175891617 - - hypothetical protein EUGRSUZ_G013602, partial [Eucalyptus grandis]
20 Hb_183086_050 0.1760238421 - - PREDICTED: metal-nicotianamine transporter YSL3 [Jatropha curcas]

Gene co-expression network

sample Hb_003884_040 Hb_003884_040 Hb_002681_080 Hb_002681_080 Hb_003884_040--Hb_002681_080 Hb_000495_080 Hb_000495_080 Hb_003884_040--Hb_000495_080 Hb_003878_080 Hb_003878_080 Hb_003884_040--Hb_003878_080 Hb_005375_110 Hb_005375_110 Hb_003884_040--Hb_005375_110 Hb_000521_090 Hb_000521_090 Hb_003884_040--Hb_000521_090 Hb_000676_200 Hb_000676_200 Hb_003884_040--Hb_000676_200 Hb_002681_080--Hb_000521_090 Hb_010757_030 Hb_010757_030 Hb_002681_080--Hb_010757_030 Hb_007002_010 Hb_007002_010 Hb_002681_080--Hb_007002_010 Hb_000599_230 Hb_000599_230 Hb_002681_080--Hb_000599_230 Hb_003077_130 Hb_003077_130 Hb_002681_080--Hb_003077_130 Hb_000352_220 Hb_000352_220 Hb_002681_080--Hb_000352_220 Hb_000495_080--Hb_000352_220 Hb_003226_190 Hb_003226_190 Hb_000495_080--Hb_003226_190 Hb_008511_140 Hb_008511_140 Hb_000495_080--Hb_008511_140 Hb_000189_250 Hb_000189_250 Hb_000495_080--Hb_000189_250 Hb_000495_080--Hb_007002_010 Hb_000640_260 Hb_000640_260 Hb_000495_080--Hb_000640_260 Hb_000069_490 Hb_000069_490 Hb_003878_080--Hb_000069_490 Hb_003878_080--Hb_010757_030 Hb_003878_080--Hb_000676_200 Hb_024714_080 Hb_024714_080 Hb_003878_080--Hb_024714_080 Hb_000934_020 Hb_000934_020 Hb_003878_080--Hb_000934_020 Hb_002282_070 Hb_002282_070 Hb_003878_080--Hb_002282_070 Hb_004735_020 Hb_004735_020 Hb_005375_110--Hb_004735_020 Hb_000120_860 Hb_000120_860 Hb_005375_110--Hb_000120_860 Hb_030959_010 Hb_030959_010 Hb_005375_110--Hb_030959_010 Hb_005375_110--Hb_000521_090 Hb_005375_110--Hb_002681_080 Hb_000056_090 Hb_000056_090 Hb_005375_110--Hb_000056_090 Hb_000117_030 Hb_000117_030 Hb_000521_090--Hb_000117_030 Hb_000521_090--Hb_004735_020 Hb_007933_030 Hb_007933_030 Hb_000521_090--Hb_007933_030 Hb_000062_400 Hb_000062_400 Hb_000521_090--Hb_000062_400 Hb_003475_020 Hb_003475_020 Hb_000676_200--Hb_003475_020 Hb_002374_250 Hb_002374_250 Hb_000676_200--Hb_002374_250 Hb_002631_250 Hb_002631_250 Hb_000676_200--Hb_002631_250 Hb_030131_030 Hb_030131_030 Hb_000676_200--Hb_030131_030 Hb_005282_020 Hb_005282_020 Hb_000676_200--Hb_005282_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0716148 0.0654286 0.0285269 0.0942718 0.0457757 0.0338371
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0651384 0.0341746 0.0656336 0.0406074 0.366162

CAGE analysis