Hb_003891_020

Information

Type -
Description -
Location Contig3891: 7037-16310
Sequence    

Annotation

kegg
ID rcu:RCOM_1528960
description lipoxygenase, putative (EC:1.13.11.12)
nr
ID XP_012065507.1
description PREDICTED: linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Jatropha curcas]
swissprot
ID O24370
description Linoleate 13S-lipoxygenase 2-1, chloroplastic OS=Solanum tuberosum GN=LOX2.1 PE=1 SV=1
trembl
ID A0A067L4M8
description Lipoxygenase OS=Jatropha curcas GN=JCGZ_16708 PE=3 SV=1
Gene Ontology
ID GO:0044434
description linoleate 13s-lipoxygenase 2- chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003891_020 0.0 - - PREDICTED: linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Jatropha curcas]
2 Hb_001279_060 0.0005195665 transcription factor TF Family: MYB hypothetical protein POPTR_0001s36220g [Populus trichocarpa]
3 Hb_043777_010 0.0051717631 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002759_210 0.0069951331 - - Peroxidase 6 precursor family protein [Populus trichocarpa]
5 Hb_000101_110 0.007670185 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
6 Hb_000012_360 0.0088268905 - - PREDICTED: uncharacterized protein LOC104248159 [Nicotiana sylvestris]
7 Hb_000272_060 0.009749145 - - unnamed protein product [Vitis vinifera]
8 Hb_002490_070 0.0106419296 - - PREDICTED: uncharacterized protein LOC105123384 isoform X1 [Populus euphratica]
9 Hb_003529_020 0.0118248992 - - hypothetical protein JCGZ_04979 [Jatropha curcas]
10 Hb_001882_120 0.0137373999 - - PREDICTED: putative ribonuclease H protein At1g65750 [Prunus mume]
11 Hb_045150_010 0.0146878282 - - PREDICTED: metalloendoproteinase 1-like [Populus euphratica]
12 Hb_021281_010 0.0147782048 - - Major latex protein, putative [Ricinus communis]
13 Hb_005743_040 0.0194132181 - - JHL22C18.10 [Jatropha curcas]
14 Hb_001504_250 0.0200811586 - - ABC transporter family protein [Hevea brasiliensis]
15 Hb_013405_170 0.0202752989 - - PREDICTED: sec-independent protein translocase protein TATB, chloroplastic [Jatropha curcas]
16 Hb_000123_080 0.0209247575 transcription factor TF Family: B3 hypothetical protein VITISV_040593 [Vitis vinifera]
17 Hb_001456_010 0.0214772843 - - o-methyltransferase, putative [Ricinus communis]
18 Hb_000378_020 0.0219948224 - - PREDICTED: uncharacterized protein LOC101497268 [Cicer arietinum]
19 Hb_004117_220 0.0222373396 - - PREDICTED: non-specific lipid-transfer protein 1-like [Jatropha curcas]
20 Hb_121058_010 0.0231411247 - - ATP binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_003891_020 Hb_003891_020 Hb_001279_060 Hb_001279_060 Hb_003891_020--Hb_001279_060 Hb_043777_010 Hb_043777_010 Hb_003891_020--Hb_043777_010 Hb_002759_210 Hb_002759_210 Hb_003891_020--Hb_002759_210 Hb_000101_110 Hb_000101_110 Hb_003891_020--Hb_000101_110 Hb_000012_360 Hb_000012_360 Hb_003891_020--Hb_000012_360 Hb_000272_060 Hb_000272_060 Hb_003891_020--Hb_000272_060 Hb_001279_060--Hb_043777_010 Hb_001279_060--Hb_002759_210 Hb_001279_060--Hb_000101_110 Hb_001279_060--Hb_000012_360 Hb_001279_060--Hb_000272_060 Hb_043777_010--Hb_000101_110 Hb_001882_120 Hb_001882_120 Hb_043777_010--Hb_001882_120 Hb_021281_010 Hb_021281_010 Hb_043777_010--Hb_021281_010 Hb_043777_010--Hb_002759_210 Hb_002759_210--Hb_000012_360 Hb_002759_210--Hb_000272_060 Hb_002490_070 Hb_002490_070 Hb_002759_210--Hb_002490_070 Hb_003529_020 Hb_003529_020 Hb_002759_210--Hb_003529_020 Hb_000101_110--Hb_001882_120 Hb_000101_110--Hb_021281_010 Hb_005743_040 Hb_005743_040 Hb_000101_110--Hb_005743_040 Hb_000012_360--Hb_000272_060 Hb_000012_360--Hb_002490_070 Hb_000012_360--Hb_003529_020 Hb_045150_010 Hb_045150_010 Hb_000012_360--Hb_045150_010 Hb_000272_060--Hb_002490_070 Hb_000272_060--Hb_003529_020 Hb_000272_060--Hb_045150_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.010575 0.01238 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis