Hb_003891_070

Information

Type -
Description -
Location Contig3891: 54503-58248
Sequence    

Annotation

kegg
ID pop:POPTR_0001s23400g
description hypothetical protein
nr
ID XP_012065508.1
description PREDICTED: uroporphyrinogen-III C-methyltransferase [Jatropha curcas]
swissprot
ID Q2Y6L7
description Siroheme synthase OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=cysG PE=3 SV=2
trembl
ID A0A067L4S5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16709 PE=3 SV=1
Gene Ontology
ID GO:0009507
description uroporphyrinogen-iii c-methyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38986: 54363-58093
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003891_070 0.0 - - PREDICTED: uroporphyrinogen-III C-methyltransferase [Jatropha curcas]
2 Hb_116349_060 0.0996010071 - - PREDICTED: protein WVD2-like 1 isoform X2 [Brassica rapa]
3 Hb_010053_040 0.110829691 - - PREDICTED: ras-related protein Rab11D [Jatropha curcas]
4 Hb_001269_200 0.1260167299 - - pentatricopeptide repeat-containing family protein [Populus trichocarpa]
5 Hb_001807_010 0.1262324561 - - hypothetical protein MTR_6g077630 [Medicago truncatula]
6 Hb_002928_010 0.1273821137 - - PREDICTED: WD repeat-containing protein DWA2 [Jatropha curcas]
7 Hb_000735_050 0.1314902081 - - PREDICTED: E3 ubiquitin-protein ligase CHIP [Jatropha curcas]
8 Hb_002311_070 0.1330554971 - - PREDICTED: AMSH-like ubiquitin thioesterase 3 [Jatropha curcas]
9 Hb_000776_100 0.1335439886 - - Cleavage stimulation factor 50 kDa subunit, putative [Ricinus communis]
10 Hb_000576_020 0.1338727247 - - PREDICTED: uncharacterized protein LOC105638286 [Jatropha curcas]
11 Hb_004631_190 0.1344204058 - - PREDICTED: protein SCAI homolog [Jatropha curcas]
12 Hb_000416_050 0.1360473655 transcription factor TF Family: BES1 BRASSINAZOLE-RESISTANT 2 protein, putative [Ricinus communis]
13 Hb_000392_050 0.1377325445 - - PREDICTED: uncharacterized protein LOC105640540 isoform X2 [Jatropha curcas]
14 Hb_018790_070 0.1378836635 - - PREDICTED: uncharacterized protein LOC105650163 [Jatropha curcas]
15 Hb_163591_010 0.1382356562 - - PREDICTED: amidase 1-like isoform X2 [Populus euphratica]
16 Hb_003858_040 0.1391748718 - - hypothetical protein POPTR_0007s14590g [Populus trichocarpa]
17 Hb_058972_010 0.1392166102 - - PREDICTED: uncharacterized protein LOC105644404 isoform X2 [Jatropha curcas]
18 Hb_000236_490 0.139788643 - - 20 kD nuclear cap binding protein, putative [Ricinus communis]
19 Hb_188996_010 0.1405125999 - - conserved hypothetical protein [Ricinus communis]
20 Hb_004631_180 0.1414741544 - - PREDICTED: LMBR1 domain-containing protein 2 homolog A [Jatropha curcas]

Gene co-expression network

sample Hb_003891_070 Hb_003891_070 Hb_116349_060 Hb_116349_060 Hb_003891_070--Hb_116349_060 Hb_010053_040 Hb_010053_040 Hb_003891_070--Hb_010053_040 Hb_001269_200 Hb_001269_200 Hb_003891_070--Hb_001269_200 Hb_001807_010 Hb_001807_010 Hb_003891_070--Hb_001807_010 Hb_002928_010 Hb_002928_010 Hb_003891_070--Hb_002928_010 Hb_000735_050 Hb_000735_050 Hb_003891_070--Hb_000735_050 Hb_000776_100 Hb_000776_100 Hb_116349_060--Hb_000776_100 Hb_003038_120 Hb_003038_120 Hb_116349_060--Hb_003038_120 Hb_000120_550 Hb_000120_550 Hb_116349_060--Hb_000120_550 Hb_000737_030 Hb_000737_030 Hb_116349_060--Hb_000737_030 Hb_007951_040 Hb_007951_040 Hb_116349_060--Hb_007951_040 Hb_002965_040 Hb_002965_040 Hb_010053_040--Hb_002965_040 Hb_010053_040--Hb_000735_050 Hb_005000_320 Hb_005000_320 Hb_010053_040--Hb_005000_320 Hb_000637_140 Hb_000637_140 Hb_010053_040--Hb_000637_140 Hb_010053_040--Hb_003038_120 Hb_016734_090 Hb_016734_090 Hb_001269_200--Hb_016734_090 Hb_000563_330 Hb_000563_330 Hb_001269_200--Hb_000563_330 Hb_011918_050 Hb_011918_050 Hb_001269_200--Hb_011918_050 Hb_039605_010 Hb_039605_010 Hb_001269_200--Hb_039605_010 Hb_002739_130 Hb_002739_130 Hb_001269_200--Hb_002739_130 Hb_006452_160 Hb_006452_160 Hb_001269_200--Hb_006452_160 Hb_001807_010--Hb_002928_010 Hb_001807_010--Hb_001269_200 Hb_000139_190 Hb_000139_190 Hb_001807_010--Hb_000139_190 Hb_001807_010--Hb_039605_010 Hb_000416_050 Hb_000416_050 Hb_001807_010--Hb_000416_050 Hb_004631_190 Hb_004631_190 Hb_001807_010--Hb_004631_190 Hb_002928_010--Hb_039605_010 Hb_003994_140 Hb_003994_140 Hb_002928_010--Hb_003994_140 Hb_027073_030 Hb_027073_030 Hb_002928_010--Hb_027073_030 Hb_058972_010 Hb_058972_010 Hb_002928_010--Hb_058972_010 Hb_000414_050 Hb_000414_050 Hb_002928_010--Hb_000414_050 Hb_001418_040 Hb_001418_040 Hb_002928_010--Hb_001418_040 Hb_000069_590 Hb_000069_590 Hb_000735_050--Hb_000069_590 Hb_000735_050--Hb_003994_140 Hb_000718_070 Hb_000718_070 Hb_000735_050--Hb_000718_070 Hb_000186_330 Hb_000186_330 Hb_000735_050--Hb_000186_330 Hb_000336_110 Hb_000336_110 Hb_000735_050--Hb_000336_110 Hb_001832_130 Hb_001832_130 Hb_000735_050--Hb_001832_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.6786 9.50428 14.4506 12.1317 10.6201 10.3199
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.23205 7.57724 3.19701 7.38172 2.28447

CAGE analysis