Hb_003891_080

Information

Type -
Description -
Location Contig3891: 71551-75606
Sequence    

Annotation

kegg
ID rcu:RCOM_1527040
description hypothetical protein
nr
ID KDP43423.1
description hypothetical protein JCGZ_16710 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LGW0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16710 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 021_H11.ab1: 71430-71818 , 052_I08.ab1: 71430-71818

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003891_080 0.0 - - hypothetical protein JCGZ_16710 [Jatropha curcas]
2 Hb_000062_300 0.1852067768 - - PREDICTED: uncharacterized protein LOC105644761 [Jatropha curcas]
3 Hb_000656_410 0.1932316117 - - hypothetical protein POPTR_0003s06410g [Populus trichocarpa]
4 Hb_033834_050 0.2108188308 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003777_360 0.2170187889 transcription factor TF Family: ERF AP2 domain-containing transcription factor family protein [Populus trichocarpa]
6 Hb_000130_230 0.2188624291 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF098-like [Jatropha curcas]
7 Hb_042871_010 0.2215785106 - - PREDICTED: acyl-coenzyme A oxidase 3, peroxisomal-like [Jatropha curcas]
8 Hb_000012_070 0.2228009145 - - cytochrome P450, putative [Ricinus communis]
9 Hb_086692_020 0.224537213 - - PREDICTED: protein kinase APK1B, chloroplastic-like [Jatropha curcas]
10 Hb_011628_020 0.2260449122 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001767_050 0.2332439538 - - conserved hypothetical protein [Ricinus communis]
12 Hb_014497_080 0.2353367077 - - PREDICTED: uncharacterized transporter YBR287W-like [Jatropha curcas]
13 Hb_029879_090 0.2446530505 - - PREDICTED: serine/threonine-protein kinase At3g07070 [Jatropha curcas]
14 Hb_002784_100 0.2469061338 - - PREDICTED: uncharacterized protein LOC105631246 [Jatropha curcas]
15 Hb_061383_010 0.2524097062 - - beta-1,3-glucanase [Hevea brasiliensis]
16 Hb_000258_180 0.2535182732 - - PREDICTED: glutathione S-transferase U10-like [Vitis vinifera]
17 Hb_001396_090 0.2554979255 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 75 [Jatropha curcas]
18 Hb_028271_020 0.258713917 - - acyl-CoA oxidase, putative [Ricinus communis]
19 Hb_000594_090 0.2595746305 - - PREDICTED: allene oxide cyclase 3, chloroplastic-like [Populus euphratica]
20 Hb_012305_020 0.260464486 - - beta-1,3-glucanase [Hevea brasiliensis]

Gene co-expression network

sample Hb_003891_080 Hb_003891_080 Hb_000062_300 Hb_000062_300 Hb_003891_080--Hb_000062_300 Hb_000656_410 Hb_000656_410 Hb_003891_080--Hb_000656_410 Hb_033834_050 Hb_033834_050 Hb_003891_080--Hb_033834_050 Hb_003777_360 Hb_003777_360 Hb_003891_080--Hb_003777_360 Hb_000130_230 Hb_000130_230 Hb_003891_080--Hb_000130_230 Hb_042871_010 Hb_042871_010 Hb_003891_080--Hb_042871_010 Hb_014497_080 Hb_014497_080 Hb_000062_300--Hb_014497_080 Hb_003732_040 Hb_003732_040 Hb_000062_300--Hb_003732_040 Hb_000062_300--Hb_042871_010 Hb_000012_070 Hb_000012_070 Hb_000062_300--Hb_000012_070 Hb_000062_300--Hb_033834_050 Hb_000656_410--Hb_042871_010 Hb_011609_110 Hb_011609_110 Hb_000656_410--Hb_011609_110 Hb_002784_100 Hb_002784_100 Hb_000656_410--Hb_002784_100 Hb_000656_410--Hb_033834_050 Hb_005321_010 Hb_005321_010 Hb_000656_410--Hb_005321_010 Hb_033834_050--Hb_002784_100 Hb_033834_050--Hb_011609_110 Hb_033834_050--Hb_042871_010 Hb_028271_020 Hb_028271_020 Hb_033834_050--Hb_028271_020 Hb_001449_100 Hb_001449_100 Hb_033834_050--Hb_001449_100 Hb_000117_100 Hb_000117_100 Hb_003777_360--Hb_000117_100 Hb_009974_020 Hb_009974_020 Hb_003777_360--Hb_009974_020 Hb_000836_490 Hb_000836_490 Hb_003777_360--Hb_000836_490 Hb_003777_360--Hb_028271_020 Hb_003777_360--Hb_000130_230 Hb_001488_370 Hb_001488_370 Hb_003777_360--Hb_001488_370 Hb_001951_250 Hb_001951_250 Hb_000130_230--Hb_001951_250 Hb_001477_150 Hb_001477_150 Hb_000130_230--Hb_001477_150 Hb_001767_050 Hb_001767_050 Hb_000130_230--Hb_001767_050 Hb_000892_070 Hb_000892_070 Hb_000130_230--Hb_000892_070 Hb_042871_010--Hb_011609_110 Hb_000239_110 Hb_000239_110 Hb_042871_010--Hb_000239_110 Hb_042871_010--Hb_014497_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 4.11111 0 1.94764 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.45075 42.4723 8.18771 5.43133 0

CAGE analysis