Hb_003893_010

Information

Type -
Description -
Location Contig3893: 3053-3998
Sequence    

Annotation

kegg
ID cam:101504831
description uncharacterized LOC101504831
nr
ID EPS58439.1
description hypothetical protein M569_16374 [Genlisea aurea]
swissprot
ID -
description -
trembl
ID S8BVQ8
description Uncharacterized protein OS=Genlisea aurea GN=M569_16374 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38990: 3353-3505
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003893_010 0.0 - - hypothetical protein M569_16374 [Genlisea aurea]
2 Hb_001959_210 0.1036989085 - - PREDICTED: uncharacterized protein LOC105638438 [Jatropha curcas]
3 Hb_000189_640 0.1038405568 - - PREDICTED: probable RNA helicase SDE3 [Jatropha curcas]
4 Hb_000200_050 0.1057705778 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
5 Hb_000483_200 0.1066237977 - - Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast precursor, putative [Ricinus communis]
6 Hb_001500_040 0.1071647159 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial isoform X2 [Jatropha curcas]
7 Hb_000602_010 0.1087475494 - - PREDICTED: rhomboid-like protease 2 isoform X1 [Jatropha curcas]
8 Hb_000029_020 0.113397924 - - Vesicle-associated membrane protein, putative [Ricinus communis]
9 Hb_001009_170 0.114769916 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
10 Hb_012490_040 0.1153953888 - - pre-mRNA cleavage factor im, 25kD subunit, putative [Ricinus communis]
11 Hb_148209_110 0.1159846412 - - putative polyol transported protein 2 [Hevea brasiliensis]
12 Hb_007441_230 0.1160108361 - - PREDICTED: probable dolichyl pyrophosphate Glc1Man9GlcNAc2 alpha-1,3-glucosyltransferase [Jatropha curcas]
13 Hb_002835_410 0.1166526556 - - clathrin coat assembly protein ap-1, putative [Ricinus communis]
14 Hb_002027_120 0.1167871602 - - PREDICTED: putative E3 ubiquitin-protein ligase RF298 [Jatropha curcas]
15 Hb_002842_020 0.1175318928 - - Prolactin regulatory element-binding protein, putative [Ricinus communis]
16 Hb_000291_110 0.1182898444 - - eukaryotic translation initiation factor [Hevea brasiliensis]
17 Hb_000221_270 0.1185868996 - - hypothetical protein JCGZ_15813 [Jatropha curcas]
18 Hb_000482_090 0.1193695256 - - PREDICTED: uncharacterized protein LOC105638145 [Jatropha curcas]
19 Hb_004324_250 0.120057872 - - PREDICTED: protein IWS1 homolog A isoform X1 [Jatropha curcas]
20 Hb_001789_090 0.1201847876 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105648450 [Jatropha curcas]

Gene co-expression network

sample Hb_003893_010 Hb_003893_010 Hb_001959_210 Hb_001959_210 Hb_003893_010--Hb_001959_210 Hb_000189_640 Hb_000189_640 Hb_003893_010--Hb_000189_640 Hb_000200_050 Hb_000200_050 Hb_003893_010--Hb_000200_050 Hb_000483_200 Hb_000483_200 Hb_003893_010--Hb_000483_200 Hb_001500_040 Hb_001500_040 Hb_003893_010--Hb_001500_040 Hb_000602_010 Hb_000602_010 Hb_003893_010--Hb_000602_010 Hb_001009_170 Hb_001009_170 Hb_001959_210--Hb_001009_170 Hb_001959_210--Hb_000483_200 Hb_006400_060 Hb_006400_060 Hb_001959_210--Hb_006400_060 Hb_127552_030 Hb_127552_030 Hb_001959_210--Hb_127552_030 Hb_006400_030 Hb_006400_030 Hb_001959_210--Hb_006400_030 Hb_024185_020 Hb_024185_020 Hb_001959_210--Hb_024185_020 Hb_002842_020 Hb_002842_020 Hb_000189_640--Hb_002842_020 Hb_002045_130 Hb_002045_130 Hb_000189_640--Hb_002045_130 Hb_000617_260 Hb_000617_260 Hb_000189_640--Hb_000617_260 Hb_000291_110 Hb_000291_110 Hb_000189_640--Hb_000291_110 Hb_000189_640--Hb_000602_010 Hb_006816_140 Hb_006816_140 Hb_000200_050--Hb_006816_140 Hb_001158_140 Hb_001158_140 Hb_000200_050--Hb_001158_140 Hb_004976_030 Hb_004976_030 Hb_000200_050--Hb_004976_030 Hb_016065_010 Hb_016065_010 Hb_000200_050--Hb_016065_010 Hb_003996_020 Hb_003996_020 Hb_000200_050--Hb_003996_020 Hb_002835_410 Hb_002835_410 Hb_000200_050--Hb_002835_410 Hb_000483_200--Hb_006400_060 Hb_007426_030 Hb_007426_030 Hb_000483_200--Hb_007426_030 Hb_000483_200--Hb_006400_030 Hb_003032_040 Hb_003032_040 Hb_000483_200--Hb_003032_040 Hb_002016_110 Hb_002016_110 Hb_000483_200--Hb_002016_110 Hb_001500_040--Hb_006400_060 Hb_001269_550 Hb_001269_550 Hb_001500_040--Hb_001269_550 Hb_001500_040--Hb_001959_210 Hb_001500_040--Hb_002016_110 Hb_001500_040--Hb_000483_200 Hb_006915_050 Hb_006915_050 Hb_001500_040--Hb_006915_050 Hb_000029_020 Hb_000029_020 Hb_000602_010--Hb_000029_020 Hb_002449_020 Hb_002449_020 Hb_000602_010--Hb_002449_020 Hb_000482_090 Hb_000482_090 Hb_000602_010--Hb_000482_090 Hb_002687_110 Hb_002687_110 Hb_000602_010--Hb_002687_110 Hb_001691_210 Hb_001691_210 Hb_000602_010--Hb_001691_210 Hb_000115_060 Hb_000115_060 Hb_000602_010--Hb_000115_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.2078 11.8423 3.01189 15.2191 36.4174 42.1926
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
36.0199 36.2009 55.8148 44.0324 15.6786

CAGE analysis