Hb_003893_020

Information

Type transcription factor
Description TF Family: MIKC
Location Contig3893: 44040-45608
Sequence    

Annotation

kegg
ID pop:POPTR_0015s11040g
description POPTRDRAFT_575376; putative transcription factor family protein
nr
ID XP_012090675.1
description PREDICTED: truncated transcription factor CAULIFLOWER A-like isoform X2 [Jatropha curcas]
swissprot
ID Q6EU39
description MADS-box transcription factor 6 OS=Oryza sativa subsp. japonica GN=MADS6 PE=1 SV=1
trembl
ID A0A067JIE7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26434 PE=4 SV=1
Gene Ontology
ID GO:0005634
description truncated transcription factor cauliflower a-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38992: 44072-46506
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003893_020 0.0 transcription factor TF Family: MIKC PREDICTED: truncated transcription factor CAULIFLOWER A-like isoform X2 [Jatropha curcas]
2 Hb_116635_010 0.1601932996 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
3 Hb_107495_050 0.1842499639 transcription factor TF Family: MIKC mads box protein, putative [Ricinus communis]
4 Hb_001922_160 0.1859761854 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
5 Hb_002701_140 0.1887647328 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 3 [Jatropha curcas]
6 Hb_005588_140 0.1891936792 - - conserved hypothetical protein [Ricinus communis]
7 Hb_127819_010 0.18959022 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
8 Hb_125981_010 0.1927052739 - - hypothetical protein POPTR_0005s042901g, partial [Populus trichocarpa]
9 Hb_138575_010 0.1967592843 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
10 Hb_155642_010 0.2024363916 - - hypothetical protein CISIN_1g022501mg [Citrus sinensis]
11 Hb_004161_010 0.2041864694 - - hypothetical protein JCGZ_21278 [Jatropha curcas]
12 Hb_001565_120 0.2061839475 - - PREDICTED: probable glutamate carboxypeptidase 2 isoform X1 [Jatropha curcas]
13 Hb_000336_160 0.2111824967 - - ATP binding protein, putative [Ricinus communis]
14 Hb_001529_020 0.2168810996 - - ankyrin repeat-containing protein, putative [Ricinus communis]
15 Hb_000825_040 0.218326999 - - catalytic, putative [Ricinus communis]
16 Hb_124302_030 0.2220093368 - - PREDICTED: serine carboxypeptidase-like [Beta vulgaris subsp. vulgaris]
17 Hb_000627_140 0.2224968901 - - ATP binding protein, putative [Ricinus communis]
18 Hb_152764_010 0.2232999981 - - Disease resistance protein RPS5, putative [Ricinus communis]
19 Hb_012760_180 0.2263222551 - - Basic-leucine zipper transcription factor family protein, putative [Theobroma cacao]
20 Hb_090459_010 0.2275438925 - - hypothetical protein POPTR_0005s042901g, partial [Populus trichocarpa]

Gene co-expression network

sample Hb_003893_020 Hb_003893_020 Hb_116635_010 Hb_116635_010 Hb_003893_020--Hb_116635_010 Hb_107495_050 Hb_107495_050 Hb_003893_020--Hb_107495_050 Hb_001922_160 Hb_001922_160 Hb_003893_020--Hb_001922_160 Hb_002701_140 Hb_002701_140 Hb_003893_020--Hb_002701_140 Hb_005588_140 Hb_005588_140 Hb_003893_020--Hb_005588_140 Hb_127819_010 Hb_127819_010 Hb_003893_020--Hb_127819_010 Hb_138575_010 Hb_138575_010 Hb_116635_010--Hb_138575_010 Hb_042553_010 Hb_042553_010 Hb_116635_010--Hb_042553_010 Hb_006911_060 Hb_006911_060 Hb_116635_010--Hb_006911_060 Hb_000940_020 Hb_000940_020 Hb_116635_010--Hb_000940_020 Hb_012702_010 Hb_012702_010 Hb_116635_010--Hb_012702_010 Hb_107495_050--Hb_005588_140 Hb_083862_010 Hb_083862_010 Hb_107495_050--Hb_083862_010 Hb_000072_310 Hb_000072_310 Hb_107495_050--Hb_000072_310 Hb_000087_180 Hb_000087_180 Hb_107495_050--Hb_000087_180 Hb_002639_090 Hb_002639_090 Hb_107495_050--Hb_002639_090 Hb_000506_140 Hb_000506_140 Hb_107495_050--Hb_000506_140 Hb_001514_040 Hb_001514_040 Hb_001922_160--Hb_001514_040 Hb_002760_060 Hb_002760_060 Hb_001922_160--Hb_002760_060 Hb_003442_050 Hb_003442_050 Hb_001922_160--Hb_003442_050 Hb_013057_030 Hb_013057_030 Hb_001922_160--Hb_013057_030 Hb_001277_150 Hb_001277_150 Hb_001922_160--Hb_001277_150 Hb_004161_010 Hb_004161_010 Hb_002701_140--Hb_004161_010 Hb_000277_020 Hb_000277_020 Hb_002701_140--Hb_000277_020 Hb_002701_140--Hb_000940_020 Hb_000825_040 Hb_000825_040 Hb_002701_140--Hb_000825_040 Hb_003847_140 Hb_003847_140 Hb_002701_140--Hb_003847_140 Hb_000656_360 Hb_000656_360 Hb_002701_140--Hb_000656_360 Hb_005588_140--Hb_000072_310 Hb_052530_030 Hb_052530_030 Hb_005588_140--Hb_052530_030 Hb_005588_140--Hb_002639_090 Hb_000840_230 Hb_000840_230 Hb_005588_140--Hb_000840_230 Hb_022534_020 Hb_022534_020 Hb_005588_140--Hb_022534_020 Hb_000960_010 Hb_000960_010 Hb_127819_010--Hb_000960_010 Hb_136886_010 Hb_136886_010 Hb_127819_010--Hb_136886_010 Hb_090459_010 Hb_090459_010 Hb_127819_010--Hb_090459_010 Hb_001565_120 Hb_001565_120 Hb_127819_010--Hb_001565_120 Hb_155642_010 Hb_155642_010 Hb_127819_010--Hb_155642_010 Hb_125981_010 Hb_125981_010 Hb_127819_010--Hb_125981_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.62143 18.9509 0.184383 2.65932 1.19014 1.26815
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.17217 0

CAGE analysis