Hb_003893_030

Information

Type -
Description -
Location Contig3893: 48922-52024
Sequence    

Annotation

kegg
ID rcu:RCOM_1505640
description Protein yrdA, putative
nr
ID XP_002511161.1
description Protein yrdA, putative [Ricinus communis]
swissprot
ID Q9FMV1
description Gamma carbonic anhydrase-like 1, mitochondrial OS=Arabidopsis thaliana GN=GAMMACAL1 PE=1 SV=1
trembl
ID B9RAD6
description Protein yrdA, putative OS=Ricinus communis GN=RCOM_1505640 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38993: 48937-51889
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003893_030 0.0 - - Protein yrdA, putative [Ricinus communis]
2 Hb_002235_210 0.0759201691 - - PREDICTED: vesicle transport v-SNARE 13-like [Populus euphratica]
3 Hb_000982_060 0.0797118203 - - PREDICTED: probable protein S-acyltransferase 14 [Jatropha curcas]
4 Hb_000442_150 0.0845428336 - - PREDICTED: uncharacterized protein LOC105649224 [Jatropha curcas]
5 Hb_005271_220 0.087901139 - - PREDICTED: general transcription factor IIE subunit 2-like [Jatropha curcas]
6 Hb_002311_180 0.0880162097 - - drought-responsive family protein [Populus trichocarpa]
7 Hb_000521_320 0.0883738489 - - hypothetical protein POPTR_0001s23520g [Populus trichocarpa]
8 Hb_005730_120 0.0891361845 - - PREDICTED: protein WHI4 [Jatropha curcas]
9 Hb_027428_010 0.0892581545 - - alpha-1,3-mannosyltransferase, putative [Ricinus communis]
10 Hb_003185_010 0.0901198973 - - PREDICTED: V-type proton ATPase subunit c''1 [Jatropha curcas]
11 Hb_007416_300 0.0911548444 - - PREDICTED: COP9 signalosome complex subunit 5b-like [Jatropha curcas]
12 Hb_000085_180 0.0919282947 - - PREDICTED: syntaxin-52-like isoform X1 [Jatropha curcas]
13 Hb_001051_080 0.0919689705 - - hypothetical protein EUGRSUZ_B02508 [Eucalyptus grandis]
14 Hb_033834_030 0.0920447848 - - PREDICTED: nucleolar complex protein 2 homolog isoform X1 [Jatropha curcas]
15 Hb_002872_030 0.0928637567 - - PREDICTED: OTU domain-containing protein DDB_G0284757 [Jatropha curcas]
16 Hb_032808_010 0.0960619065 - - PREDICTED: mitochondrial outer membrane protein porin of 34 kDa [Jatropha curcas]
17 Hb_000649_230 0.0964784664 - - PREDICTED: ubiquitin-conjugating enzyme E2 variant 1A-like [Jatropha curcas]
18 Hb_000522_150 0.0971010984 - - PREDICTED: uncharacterized protein LOC105646670 [Jatropha curcas]
19 Hb_014720_120 0.0981921404 - - Phosphoenolpyruvate/phosphate translocator 1, chloroplastic -like protein [Gossypium arboreum]
20 Hb_004310_020 0.0983143534 - - PREDICTED: COP9 signalosome complex subunit 7 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003893_030 Hb_003893_030 Hb_002235_210 Hb_002235_210 Hb_003893_030--Hb_002235_210 Hb_000982_060 Hb_000982_060 Hb_003893_030--Hb_000982_060 Hb_000442_150 Hb_000442_150 Hb_003893_030--Hb_000442_150 Hb_005271_220 Hb_005271_220 Hb_003893_030--Hb_005271_220 Hb_002311_180 Hb_002311_180 Hb_003893_030--Hb_002311_180 Hb_000521_320 Hb_000521_320 Hb_003893_030--Hb_000521_320 Hb_004631_180 Hb_004631_180 Hb_002235_210--Hb_004631_180 Hb_001051_080 Hb_001051_080 Hb_002235_210--Hb_001051_080 Hb_012322_020 Hb_012322_020 Hb_002235_210--Hb_012322_020 Hb_006916_040 Hb_006916_040 Hb_002235_210--Hb_006916_040 Hb_004310_020 Hb_004310_020 Hb_002235_210--Hb_004310_020 Hb_135831_010 Hb_135831_010 Hb_000982_060--Hb_135831_010 Hb_000000_270 Hb_000000_270 Hb_000982_060--Hb_000000_270 Hb_000982_060--Hb_000442_150 Hb_001135_130 Hb_001135_130 Hb_000982_060--Hb_001135_130 Hb_000683_070 Hb_000683_070 Hb_000982_060--Hb_000683_070 Hb_008246_040 Hb_008246_040 Hb_000442_150--Hb_008246_040 Hb_002671_140 Hb_002671_140 Hb_000442_150--Hb_002671_140 Hb_057878_010 Hb_057878_010 Hb_000442_150--Hb_057878_010 Hb_000442_150--Hb_001135_130 Hb_005730_120 Hb_005730_120 Hb_005271_220--Hb_005730_120 Hb_002232_410 Hb_002232_410 Hb_005271_220--Hb_002232_410 Hb_002303_070 Hb_002303_070 Hb_005271_220--Hb_002303_070 Hb_032808_010 Hb_032808_010 Hb_005271_220--Hb_032808_010 Hb_008511_120 Hb_008511_120 Hb_005271_220--Hb_008511_120 Hb_000403_050 Hb_000403_050 Hb_005271_220--Hb_000403_050 Hb_002311_180--Hb_005730_120 Hb_002311_180--Hb_005271_220 Hb_007416_300 Hb_007416_300 Hb_002311_180--Hb_007416_300 Hb_002872_030 Hb_002872_030 Hb_002311_180--Hb_002872_030 Hb_007885_060 Hb_007885_060 Hb_002311_180--Hb_007885_060 Hb_021576_100 Hb_021576_100 Hb_002311_180--Hb_021576_100 Hb_000302_270 Hb_000302_270 Hb_000521_320--Hb_000302_270 Hb_000010_400 Hb_000010_400 Hb_000521_320--Hb_000010_400 Hb_004678_040 Hb_004678_040 Hb_000521_320--Hb_004678_040 Hb_002950_100 Hb_002950_100 Hb_000521_320--Hb_002950_100 Hb_011995_010 Hb_011995_010 Hb_000521_320--Hb_011995_010 Hb_025645_010 Hb_025645_010 Hb_000521_320--Hb_025645_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
42.3477 24.2851 28.4223 39.3312 30.0577 25.3453
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
33.7344 31.4281 21.8343 17.9905 13.6436

CAGE analysis