Hb_003893_040

Information

Type transcription factor
Description TF Family: SBP
Location Contig3893: 60551-64002
Sequence    

Annotation

kegg
ID rcu:RCOM_1505600
description Squamosa promoter-binding protein, putative
nr
ID XP_002511157.1
description Squamosa promoter-binding protein, putative [Ricinus communis]
swissprot
ID P0DI11
description Squamosa promoter-binding-like protein 13B OS=Arabidopsis thaliana GN=SPL13B PE=3 SV=1
trembl
ID B9RAD2
description Squamosa promoter-binding protein, putative OS=Ricinus communis GN=RCOM_1505600 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38994: 60880-63214 , PASA_asmbl_38995: 64109-64276
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003893_040 0.0 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
2 Hb_004206_010 0.1497832161 - - PREDICTED: uncharacterized protein LOC103321196 [Prunus mume]
3 Hb_004738_080 0.1786742132 - - transcription initiation factor TFIID subunit 13-like [Jatropha curcas]
4 Hb_001981_070 0.1792364156 - - tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase, putative [Ricinus communis]
5 Hb_003055_120 0.1793771435 - - Protein C20orf11, putative [Ricinus communis]
6 Hb_057183_040 0.1794217539 - - PREDICTED: WPP domain-interacting tail-anchored protein 2 [Jatropha curcas]
7 Hb_000690_080 0.1847960198 transcription factor TF Family: HB -
8 Hb_000165_030 0.188072229 - - PREDICTED: uncharacterized protein LOC105645673 isoform X1 [Jatropha curcas]
9 Hb_001847_020 0.1880852248 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Eucalyptus grandis]
10 Hb_002026_220 0.1888871713 - - Glutamate--cysteine ligase, chloroplast precursor, putative [Ricinus communis]
11 Hb_001823_100 0.1922111628 - - PREDICTED: probable ribosome biogenesis protein RLP24 [Vitis vinifera]
12 Hb_012762_050 0.1942650868 - - PREDICTED: uncharacterized protein LOC105634060 [Jatropha curcas]
13 Hb_002875_080 0.1958275668 - - protein with unknown function [Ricinus communis]
14 Hb_000000_080 0.1963261957 - - lipoate-protein ligase B, putative [Ricinus communis]
15 Hb_000926_020 0.1963875371 - - -
16 Hb_001609_030 0.1974528281 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2 isoform X2 [Jatropha curcas]
17 Hb_005147_100 0.1978078073 - - conserved hypothetical protein [Ricinus communis]
18 Hb_008453_150 0.1979609367 - - PREDICTED: uncharacterized protein LOC105635307 isoform X2 [Jatropha curcas]
19 Hb_000221_220 0.1981780105 - - PREDICTED: 40S ribosomal protein S6 [Jatropha curcas]
20 Hb_007152_020 0.1982926847 - - PREDICTED: zinc finger CCCH domain-containing protein 62 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_003893_040 Hb_003893_040 Hb_004206_010 Hb_004206_010 Hb_003893_040--Hb_004206_010 Hb_004738_080 Hb_004738_080 Hb_003893_040--Hb_004738_080 Hb_001981_070 Hb_001981_070 Hb_003893_040--Hb_001981_070 Hb_003055_120 Hb_003055_120 Hb_003893_040--Hb_003055_120 Hb_057183_040 Hb_057183_040 Hb_003893_040--Hb_057183_040 Hb_000690_080 Hb_000690_080 Hb_003893_040--Hb_000690_080 Hb_000165_030 Hb_000165_030 Hb_004206_010--Hb_000165_030 Hb_003609_040 Hb_003609_040 Hb_004206_010--Hb_003609_040 Hb_000107_390 Hb_000107_390 Hb_004206_010--Hb_000107_390 Hb_000172_370 Hb_000172_370 Hb_004206_010--Hb_000172_370 Hb_002997_170 Hb_002997_170 Hb_004206_010--Hb_002997_170 Hb_000417_180 Hb_000417_180 Hb_004206_010--Hb_000417_180 Hb_002477_240 Hb_002477_240 Hb_004738_080--Hb_002477_240 Hb_000703_140 Hb_000703_140 Hb_004738_080--Hb_000703_140 Hb_000260_080 Hb_000260_080 Hb_004738_080--Hb_000260_080 Hb_000494_020 Hb_000494_020 Hb_004738_080--Hb_000494_020 Hb_004931_090 Hb_004931_090 Hb_004738_080--Hb_004931_090 Hb_003687_110 Hb_003687_110 Hb_004738_080--Hb_003687_110 Hb_008453_150 Hb_008453_150 Hb_001981_070--Hb_008453_150 Hb_185467_020 Hb_185467_020 Hb_001981_070--Hb_185467_020 Hb_000084_310 Hb_000084_310 Hb_001981_070--Hb_000084_310 Hb_001981_070--Hb_000165_030 Hb_002631_050 Hb_002631_050 Hb_001981_070--Hb_002631_050 Hb_004852_030 Hb_004852_030 Hb_001981_070--Hb_004852_030 Hb_002874_190 Hb_002874_190 Hb_003055_120--Hb_002874_190 Hb_000988_080 Hb_000988_080 Hb_003055_120--Hb_000988_080 Hb_003055_120--Hb_003687_110 Hb_012762_050 Hb_012762_050 Hb_003055_120--Hb_012762_050 Hb_005539_350 Hb_005539_350 Hb_003055_120--Hb_005539_350 Hb_011381_100 Hb_011381_100 Hb_003055_120--Hb_011381_100 Hb_057183_040--Hb_008453_150 Hb_000028_470 Hb_000028_470 Hb_057183_040--Hb_000028_470 Hb_001140_200 Hb_001140_200 Hb_057183_040--Hb_001140_200 Hb_001823_100 Hb_001823_100 Hb_057183_040--Hb_001823_100 Hb_000120_240 Hb_000120_240 Hb_057183_040--Hb_000120_240 Hb_003060_070 Hb_003060_070 Hb_057183_040--Hb_003060_070 Hb_004944_010 Hb_004944_010 Hb_000690_080--Hb_004944_010 Hb_009767_120 Hb_009767_120 Hb_000690_080--Hb_009767_120 Hb_000977_130 Hb_000977_130 Hb_000690_080--Hb_000977_130 Hb_000107_050 Hb_000107_050 Hb_000690_080--Hb_000107_050 Hb_141131_010 Hb_141131_010 Hb_000690_080--Hb_141131_010 Hb_003874_020 Hb_003874_020 Hb_000690_080--Hb_003874_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.1873 0.711031 4.58403 4.88657 6.89024 9.49261
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.71277 13.6535 10.6115 1.31446 0.805524

CAGE analysis