Hb_003893_050

Information

Type -
Description -
Location Contig3893: 67414-71823
Sequence    

Annotation

kegg
ID rcu:RCOM_1505590
description DNA damage tolerance protein rad31, putative
nr
ID XP_012090667.1
description PREDICTED: SUMO-activating enzyme subunit 1B-1 isoform X1 [Jatropha curcas]
swissprot
ID P0DI13
description SUMO-activating enzyme subunit 1B-2 OS=Arabidopsis thaliana GN=SAE1B-2 PE=1 SV=1
trembl
ID A0A067JIE4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26429 PE=4 SV=1
Gene Ontology
ID GO:0008641
description sumo-activating enzyme subunit 1b-1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38996: 67518-71690 , PASA_asmbl_38997: 67518-71604 , PASA_asmbl_38998: 67543-71768 , PASA_asmbl_38999: 68963-69191 , PASA_asmbl_39001: 70559-71272
cDNA
(Sanger)
(ID:Location)		 009_J24.ab1: 67518-70544 , 034_L05.ab1: 67455-71233 , 035_H02.ab1: 67518-70544

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003893_050 0.0 - - PREDICTED: SUMO-activating enzyme subunit 1B-1 isoform X1 [Jatropha curcas]
2 Hb_005063_050 0.0538163373 - - PREDICTED: probable prefoldin subunit 4 isoform X1 [Jatropha curcas]
3 Hb_000283_110 0.0598061367 - - PREDICTED: probable prefoldin subunit 4 isoform X2 [Jatropha curcas]
4 Hb_002431_050 0.0604024111 - - PREDICTED: probable protein phosphatase 2C 11 [Jatropha curcas]
5 Hb_003203_040 0.0617961737 - - PREDICTED: transcription initiation factor TFIID subunit 7 [Vitis vinifera]
6 Hb_010672_060 0.0630182366 - - gaba(A) receptor-associated protein, putative [Ricinus communis]
7 Hb_000029_200 0.0683965157 - - PREDICTED: uncharacterized protein LOC105643943 [Jatropha curcas]
8 Hb_011628_040 0.0724608541 - - hypothetical protein CICLE_v10032980mg [Citrus clementina]
9 Hb_000265_050 0.0730425576 - - hypothetical protein CISIN_1g033530mg [Citrus sinensis]
10 Hb_000441_190 0.0731939809 - - PREDICTED: GDP-L-galactose phosphorylase 1-like isoform X2 [Vitis vinifera]
11 Hb_003226_210 0.0739438349 - - hypothetical protein PRUPE_ppa013414mg [Prunus persica]
12 Hb_010672_070 0.0752033066 - - hypothetical protein ZEAMMB73_607937, partial [Zea mays]
13 Hb_000699_160 0.0777311707 - - PREDICTED: C-Myc-binding protein homolog [Jatropha curcas]
14 Hb_076626_010 0.0779464422 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003455_040 0.0793948512 - - hypothetical protein JCGZ_17270 [Jatropha curcas]
16 Hb_001842_040 0.080370282 - - PREDICTED: uncharacterized protein LOC100800807 isoform X2 [Glycine max]
17 Hb_003994_040 0.0830734954 - - -
18 Hb_000134_070 0.0832951243 - - 60S ribosomal protein L6, putative [Ricinus communis]
19 Hb_005511_160 0.0837419857 - - OB-fold nucleic acid binding domain-containing protein [Theobroma cacao]
20 Hb_002687_170 0.0848590471 - - PREDICTED: G patch domain and ankyrin repeat-containing protein 1 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_003893_050 Hb_003893_050 Hb_005063_050 Hb_005063_050 Hb_003893_050--Hb_005063_050 Hb_000283_110 Hb_000283_110 Hb_003893_050--Hb_000283_110 Hb_002431_050 Hb_002431_050 Hb_003893_050--Hb_002431_050 Hb_003203_040 Hb_003203_040 Hb_003893_050--Hb_003203_040 Hb_010672_060 Hb_010672_060 Hb_003893_050--Hb_010672_060 Hb_000029_200 Hb_000029_200 Hb_003893_050--Hb_000029_200 Hb_008921_020 Hb_008921_020 Hb_005063_050--Hb_008921_020 Hb_005063_050--Hb_010672_060 Hb_000699_160 Hb_000699_160 Hb_005063_050--Hb_000699_160 Hb_000265_050 Hb_000265_050 Hb_005063_050--Hb_000265_050 Hb_143496_010 Hb_143496_010 Hb_005063_050--Hb_143496_010 Hb_003226_210 Hb_003226_210 Hb_000283_110--Hb_003226_210 Hb_000283_110--Hb_002431_050 Hb_001638_260 Hb_001638_260 Hb_000283_110--Hb_001638_260 Hb_000283_110--Hb_000029_200 Hb_000441_190 Hb_000441_190 Hb_000283_110--Hb_000441_190 Hb_002431_050--Hb_010672_060 Hb_002830_020 Hb_002830_020 Hb_002431_050--Hb_002830_020 Hb_007416_020 Hb_007416_020 Hb_002431_050--Hb_007416_020 Hb_029584_060 Hb_029584_060 Hb_002431_050--Hb_029584_060 Hb_001141_030 Hb_001141_030 Hb_003203_040--Hb_001141_030 Hb_011628_040 Hb_011628_040 Hb_003203_040--Hb_011628_040 Hb_010672_070 Hb_010672_070 Hb_003203_040--Hb_010672_070 Hb_005511_160 Hb_005511_160 Hb_003203_040--Hb_005511_160 Hb_003203_040--Hb_005063_050 Hb_010672_060--Hb_000699_160 Hb_000111_340 Hb_000111_340 Hb_010672_060--Hb_000111_340 Hb_010672_060--Hb_007416_020 Hb_002864_050 Hb_002864_050 Hb_000029_200--Hb_002864_050 Hb_000510_110 Hb_000510_110 Hb_000029_200--Hb_000510_110 Hb_001314_100 Hb_001314_100 Hb_000029_200--Hb_001314_100 Hb_012573_070 Hb_012573_070 Hb_000029_200--Hb_012573_070 Hb_007416_030 Hb_007416_030 Hb_000029_200--Hb_007416_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.8832 7.39068 11.4204 18.7279 18.026 24.9462
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
37.6761 79.5558 33.3175 10.2983 12.3325

CAGE analysis