Hb_003893_100

Information

Type -
Description -
Location Contig3893: 84314-85123
Sequence    

Annotation

kegg
ID rcu:RCOM_1505550
description hypothetical protein
nr
ID XP_012090663.1
description PREDICTED: uncharacterized protein LOC105648774 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JST9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26425 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39008: 85223-85430
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003893_100 0.0 - - PREDICTED: uncharacterized protein LOC105648774 [Jatropha curcas]
2 Hb_000797_030 0.0532211928 - - PREDICTED: leucoanthocyanidin dioxygenase [Jatropha curcas]
3 Hb_003097_200 0.060972693 - - conserved hypothetical protein [Ricinus communis]
4 Hb_004316_130 0.0680789244 - - PREDICTED: glutathione transferase GST 23-like, partial [Eucalyptus grandis]
5 Hb_012368_080 0.0786338686 - - PREDICTED: uncharacterized protein LOC105126277 [Populus euphratica]
6 Hb_000297_180 0.0808181462 - - Desacetoxyvindoline 4-hydroxylase, putative [Ricinus communis]
7 Hb_006637_040 0.0911993841 - - phenylalanine ammonia-lyase 2 [Manihot esculenta]
8 Hb_018591_010 0.0967923626 - - kinase, putative [Ricinus communis]
9 Hb_002475_070 0.0968088105 - - hypothetical protein POPTR_0017s02440g, partial [Populus trichocarpa]
10 Hb_001758_120 0.1013544488 - - unnamed protein product [Vitis vinifera]
11 Hb_164283_010 0.1049130252 - - hypothetical protein RCOM_0725500 [Ricinus communis]
12 Hb_008418_010 0.1133764668 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH93-like [Jatropha curcas]
13 Hb_144783_010 0.1142471978 - - glutathione s-transferase, putative [Ricinus communis]
14 Hb_000911_050 0.1212053104 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 21 [Jatropha curcas]
15 Hb_004544_070 0.1315710366 - - unnamed protein product [Vitis vinifera]
16 Hb_000934_170 0.1366419647 - - alcohol dehydrogenase, putative [Ricinus communis]
17 Hb_011145_020 0.1389737103 - - PREDICTED: metalloendoproteinase 1-like [Pyrus x bretschneideri]
18 Hb_002301_420 0.1420640065 transcription factor TF Family: bHLH hypothetical protein POPTR_0011s05320g [Populus trichocarpa]
19 Hb_001545_270 0.143001226 - - laccase, putative [Ricinus communis]
20 Hb_002749_070 0.1440691119 - - PREDICTED: uncharacterized protein LOC105635941 [Jatropha curcas]

Gene co-expression network

sample Hb_003893_100 Hb_003893_100 Hb_000797_030 Hb_000797_030 Hb_003893_100--Hb_000797_030 Hb_003097_200 Hb_003097_200 Hb_003893_100--Hb_003097_200 Hb_004316_130 Hb_004316_130 Hb_003893_100--Hb_004316_130 Hb_012368_080 Hb_012368_080 Hb_003893_100--Hb_012368_080 Hb_000297_180 Hb_000297_180 Hb_003893_100--Hb_000297_180 Hb_006637_040 Hb_006637_040 Hb_003893_100--Hb_006637_040 Hb_000797_030--Hb_003097_200 Hb_000911_050 Hb_000911_050 Hb_000797_030--Hb_000911_050 Hb_000797_030--Hb_006637_040 Hb_000797_030--Hb_004316_130 Hb_001758_120 Hb_001758_120 Hb_000797_030--Hb_001758_120 Hb_003097_200--Hb_000911_050 Hb_003097_200--Hb_006637_040 Hb_003097_200--Hb_004316_130 Hb_003097_200--Hb_001758_120 Hb_004316_130--Hb_000297_180 Hb_144783_010 Hb_144783_010 Hb_004316_130--Hb_144783_010 Hb_002475_070 Hb_002475_070 Hb_004316_130--Hb_002475_070 Hb_012368_080--Hb_000297_180 Hb_012368_080--Hb_006637_040 Hb_018591_010 Hb_018591_010 Hb_012368_080--Hb_018591_010 Hb_098030_010 Hb_098030_010 Hb_012368_080--Hb_098030_010 Hb_002301_420 Hb_002301_420 Hb_012368_080--Hb_002301_420 Hb_000297_180--Hb_144783_010 Hb_035583_010 Hb_035583_010 Hb_000297_180--Hb_035583_010 Hb_000297_180--Hb_002475_070 Hb_164283_010 Hb_164283_010 Hb_006637_040--Hb_164283_010 Hb_006637_040--Hb_018591_010 Hb_008418_010 Hb_008418_010 Hb_006637_040--Hb_008418_010 Hb_006637_040--Hb_001758_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.440837 1.34482 6.06664 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 20.1901 1.36387

CAGE analysis