Hb_003893_130

Information

Type -
Description -
Location Contig3893: 136778-138436
Sequence    

Annotation

kegg
ID rcu:RCOM_1505530
description metal ion binding protein, putative
nr
ID XP_002511150.1
description metal ion binding protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RAC5
description Metal ion binding protein, putative OS=Ricinus communis GN=RCOM_1505530 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39009: 136696-138694 , PASA_asmbl_39010: 136674-137006 , PASA_asmbl_39011: 137768-138029
cDNA
(Sanger)
(ID:Location)		 013_K05.ab1: 136674-137006 , 023_G06.ab1: 136674-137006 , 048_I03.ab1: 136674-137006

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003893_130 0.0 - - metal ion binding protein, putative [Ricinus communis]
2 Hb_000620_040 0.0851437814 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
3 Hb_001541_210 0.0961801904 - - hypothetical protein POPTR_0008s19020g [Populus trichocarpa]
4 Hb_003032_030 0.0961914018 transcription factor TF Family: G2-like PREDICTED: uncharacterized protein LOC105639296 isoform X1 [Jatropha curcas]
5 Hb_005741_030 0.0965376464 - - PREDICTED: PI-PLC X domain-containing protein At5g67130-like [Jatropha curcas]
6 Hb_000193_180 0.0975473421 transcription factor TF Family: MYB PREDICTED: transcription factor MYB28-like [Jatropha curcas]
7 Hb_005675_070 0.0984802821 - - hypothetical protein EUGRSUZ_K01585 [Eucalyptus grandis]
8 Hb_001766_130 0.1050200675 - - zinc finger protein, putative [Ricinus communis]
9 Hb_015934_090 0.1068207484 - - PREDICTED: uncharacterized protein LOC105640158 [Jatropha curcas]
10 Hb_147006_010 0.1100124648 - - receptor like protein 35 [Arabidopsis thaliana]
11 Hb_000710_030 0.1122214061 - - PREDICTED: uncharacterized protein LOC105629456 [Jatropha curcas]
12 Hb_010164_030 0.1126531651 - - PREDICTED: CBS domain-containing protein CBSX1, chloroplastic [Jatropha curcas]
13 Hb_009785_030 0.1141952538 transcription factor TF Family: NAC PREDICTED: NAC transcription factor ONAC010 [Jatropha curcas]
14 Hb_185726_010 0.1159990381 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
15 Hb_000012_350 0.116558133 transcription factor TF Family: HB PREDICTED: homeobox protein ATH1 [Jatropha curcas]
16 Hb_009522_010 0.1171570766 - - hypothetical protein POPTR_0006s18790g [Populus trichocarpa]
17 Hb_002043_070 0.1186042079 - - PREDICTED: jacalin-related lectin 19 [Jatropha curcas]
18 Hb_009070_020 0.118781523 - - PREDICTED: uncharacterized protein LOC102612959 [Citrus sinensis]
19 Hb_000680_060 0.1206631091 - - hypothetical protein POPTR_0001s20790g [Populus trichocarpa]
20 Hb_002890_330 0.120670801 - - caspase, putative [Ricinus communis]

Gene co-expression network

sample Hb_003893_130 Hb_003893_130 Hb_000620_040 Hb_000620_040 Hb_003893_130--Hb_000620_040 Hb_001541_210 Hb_001541_210 Hb_003893_130--Hb_001541_210 Hb_003032_030 Hb_003032_030 Hb_003893_130--Hb_003032_030 Hb_005741_030 Hb_005741_030 Hb_003893_130--Hb_005741_030 Hb_000193_180 Hb_000193_180 Hb_003893_130--Hb_000193_180 Hb_005675_070 Hb_005675_070 Hb_003893_130--Hb_005675_070 Hb_000620_040--Hb_003032_030 Hb_147006_010 Hb_147006_010 Hb_000620_040--Hb_147006_010 Hb_015934_090 Hb_015934_090 Hb_000620_040--Hb_015934_090 Hb_010164_030 Hb_010164_030 Hb_000620_040--Hb_010164_030 Hb_020375_010 Hb_020375_010 Hb_000620_040--Hb_020375_010 Hb_001405_170 Hb_001405_170 Hb_001541_210--Hb_001405_170 Hb_002890_330 Hb_002890_330 Hb_001541_210--Hb_002890_330 Hb_002053_190 Hb_002053_190 Hb_001541_210--Hb_002053_190 Hb_002960_030 Hb_002960_030 Hb_001541_210--Hb_002960_030 Hb_001541_210--Hb_005741_030 Hb_002043_070 Hb_002043_070 Hb_001541_210--Hb_002043_070 Hb_003032_030--Hb_015934_090 Hb_003032_030--Hb_147006_010 Hb_003032_030--Hb_020375_010 Hb_009023_010 Hb_009023_010 Hb_003032_030--Hb_009023_010 Hb_000749_300 Hb_000749_300 Hb_003032_030--Hb_000749_300 Hb_103225_030 Hb_103225_030 Hb_005741_030--Hb_103225_030 Hb_001408_080 Hb_001408_080 Hb_005741_030--Hb_001408_080 Hb_001427_100 Hb_001427_100 Hb_005741_030--Hb_001427_100 Hb_036520_030 Hb_036520_030 Hb_005741_030--Hb_036520_030 Hb_039946_060 Hb_039946_060 Hb_005741_030--Hb_039946_060 Hb_001766_130 Hb_001766_130 Hb_000193_180--Hb_001766_130 Hb_096027_010 Hb_096027_010 Hb_000193_180--Hb_096027_010 Hb_000193_180--Hb_005675_070 Hb_000193_180--Hb_039946_060 Hb_161103_010 Hb_161103_010 Hb_000193_180--Hb_161103_010 Hb_005211_210 Hb_005211_210 Hb_005675_070--Hb_005211_210 Hb_158189_010 Hb_158189_010 Hb_005675_070--Hb_158189_010 Hb_008689_010 Hb_008689_010 Hb_005675_070--Hb_008689_010 Hb_005675_070--Hb_001541_210 Hb_077774_010 Hb_077774_010 Hb_005675_070--Hb_077774_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.842893 50.4755 79.604 184.799 1.99341 0.404655
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.195332 0.0511981 0 0.20704 116.752

CAGE analysis