Hb_003893_140

Information

Type -
Description -
Location Contig3893: 146205-147985
Sequence    

Annotation

kegg
ID rcu:RCOM_1505510
description palmitoyl-acyl carrier protein thioesterase (EC:3.1.2.14)
nr
ID XP_002511148.1
description palmitoyl-acyl carrier protein thioesterase [Ricinus communis]
swissprot
ID Q9SJE2
description Palmitoyl-acyl carrier protein thioesterase, chloroplastic OS=Arabidopsis thaliana GN=FATB PE=1 SV=1
trembl
ID B9RAC3
description Palmitoyl-acyl carrier protein thioesterase OS=Ricinus communis GN=RCOM_1505510 PE=4 SV=1
Gene Ontology
ID GO:0016297
description palmitoyl-acyl carrier protein chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003893_140 0.0 - - palmitoyl-acyl carrier protein thioesterase [Ricinus communis]
2 Hb_032225_030 0.1835353749 - - PREDICTED: leucine-rich repeat extensin-like protein 2 [Jatropha curcas]
3 Hb_007545_140 0.1929513324 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105141503 [Populus euphratica]
4 Hb_000056_220 0.2221071836 - - PREDICTED: HVA22-like protein c [Jatropha curcas]
5 Hb_000915_070 0.2278597766 - - ATP binding protein, putative [Ricinus communis]
6 Hb_025254_020 0.2377675545 - - PREDICTED: formate dehydrogenase, mitochondrial [Vitis vinifera]
7 Hb_001369_140 0.241822729 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001863_200 0.2451785327 - - chloroplast 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase [Hevea brasiliensis]
9 Hb_173741_010 0.245332398 - - PREDICTED: caffeoyl-CoA O-methyltransferase isoform X3 [Musa acuminata subsp. malaccensis]
10 Hb_000099_020 0.2456634224 desease resistance Gene Name: ABC_membrane PREDICTED: uncharacterized protein LOC103431057 [Malus domestica]
11 Hb_004195_090 0.2458572999 - - PREDICTED: probable mitochondrial chaperone bcs1 [Jatropha curcas]
12 Hb_003602_070 0.246939302 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH93-like [Jatropha curcas]
13 Hb_007403_040 0.2472156777 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001170_010 0.252239455 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
15 Hb_001439_110 0.2531332235 transcription factor TF Family: ERF PREDICTED: uncharacterized protein LOC105133481 [Populus euphratica]
16 Hb_032631_050 0.254514037 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
17 Hb_006275_010 0.2549080921 - - PREDICTED: ribulose bisphosphate carboxylase small chain clone 512-like [Jatropha curcas]
18 Hb_004122_030 0.2552369287 transcription factor TF Family: HB PREDICTED: WUSCHEL-related homeobox 4-like [Populus euphratica]
19 Hb_003607_060 0.2579013897 - - PREDICTED: alcohol dehydrogenase-like [Jatropha curcas]
20 Hb_031336_020 0.2580093148 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003893_140 Hb_003893_140 Hb_032225_030 Hb_032225_030 Hb_003893_140--Hb_032225_030 Hb_007545_140 Hb_007545_140 Hb_003893_140--Hb_007545_140 Hb_000056_220 Hb_000056_220 Hb_003893_140--Hb_000056_220 Hb_000915_070 Hb_000915_070 Hb_003893_140--Hb_000915_070 Hb_025254_020 Hb_025254_020 Hb_003893_140--Hb_025254_020 Hb_001369_140 Hb_001369_140 Hb_003893_140--Hb_001369_140 Hb_042509_020 Hb_042509_020 Hb_032225_030--Hb_042509_020 Hb_032225_030--Hb_007545_140 Hb_032225_030--Hb_001369_140 Hb_001170_010 Hb_001170_010 Hb_032225_030--Hb_001170_010 Hb_000110_380 Hb_000110_380 Hb_032225_030--Hb_000110_380 Hb_030982_060 Hb_030982_060 Hb_032225_030--Hb_030982_060 Hb_002597_010 Hb_002597_010 Hb_007545_140--Hb_002597_010 Hb_005152_010 Hb_005152_010 Hb_007545_140--Hb_005152_010 Hb_000589_210 Hb_000589_210 Hb_007545_140--Hb_000589_210 Hb_007545_140--Hb_001369_140 Hb_000380_210 Hb_000380_210 Hb_007545_140--Hb_000380_210 Hb_006275_010 Hb_006275_010 Hb_000056_220--Hb_006275_010 Hb_000471_080 Hb_000471_080 Hb_000056_220--Hb_000471_080 Hb_000056_220--Hb_007545_140 Hb_003602_070 Hb_003602_070 Hb_000056_220--Hb_003602_070 Hb_000056_220--Hb_000915_070 Hb_000915_070--Hb_025254_020 Hb_001959_030 Hb_001959_030 Hb_000915_070--Hb_001959_030 Hb_000098_310 Hb_000098_310 Hb_000915_070--Hb_000098_310 Hb_009823_010 Hb_009823_010 Hb_000915_070--Hb_009823_010 Hb_000915_070--Hb_002597_010 Hb_000580_070 Hb_000580_070 Hb_000915_070--Hb_000580_070 Hb_000099_020 Hb_000099_020 Hb_025254_020--Hb_000099_020 Hb_025254_020--Hb_001959_030 Hb_018133_110 Hb_018133_110 Hb_025254_020--Hb_018133_110 Hb_002042_200 Hb_002042_200 Hb_025254_020--Hb_002042_200 Hb_000032_560 Hb_000032_560 Hb_025254_020--Hb_000032_560 Hb_002016_020 Hb_002016_020 Hb_025254_020--Hb_002016_020 Hb_064122_010 Hb_064122_010 Hb_001369_140--Hb_064122_010 Hb_001369_140--Hb_000380_210 Hb_000080_080 Hb_000080_080 Hb_001369_140--Hb_000080_080 Hb_009780_110 Hb_009780_110 Hb_001369_140--Hb_009780_110 Hb_001369_140--Hb_002597_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.503562 0.721986 0.322377 1.97781 0.0794957 0.0394615
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.506929 0.144991 0.134081 3.17216 0

CAGE analysis