Hb_003893_170

Information

Type -
Description -
Location Contig3893: 162580-163973
Sequence    

Annotation

kegg
ID pop:POPTR_0015s11180g
description POPTRDRAFT_776313; hypothetical protein
nr
ID KDP22592.1
description hypothetical protein JCGZ_26423 [Jatropha curcas]
swissprot
ID Q9FED2
description HVA22-like protein e OS=Arabidopsis thaliana GN=HVA22E PE=2 SV=1
trembl
ID A0A067JFH6
description HVA22-like protein OS=Jatropha curcas GN=JCGZ_26423 PE=3 SV=1
Gene Ontology
ID GO:0016021
description hva22-like protein e

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39012: 162485-163904 , PASA_asmbl_39013: 163391-163904
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003893_170 0.0 - - hypothetical protein JCGZ_26423 [Jatropha curcas]
2 Hb_008453_060 0.1215534831 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003751_110 0.1285829863 - - unknown [Lotus japonicus]
4 Hb_004032_240 0.1428655728 - - electron transporter, putative [Ricinus communis]
5 Hb_001439_120 0.1487268972 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000733_060 0.1587906593 - - PREDICTED: protein GUCD1 isoform X1 [Jatropha curcas]
7 Hb_008453_020 0.1597235116 - - PREDICTED: E3 ubiquitin-protein ligase ATL23 [Jatropha curcas]
8 Hb_001341_040 0.1598998927 - - hypothetical protein JCGZ_05578 [Jatropha curcas]
9 Hb_023226_060 0.1640180849 - - unnamed protein product [Vitis vinifera]
10 Hb_000185_120 0.1644546602 - - PREDICTED: uncharacterized protein LOC105640342 [Jatropha curcas]
11 Hb_000397_070 0.164583367 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
12 Hb_010931_110 0.1650149217 - - ubiquitin-protein ligase, putative [Ricinus communis]
13 Hb_000556_080 0.1683956574 - - PREDICTED: synaptotagmin-5 [Pyrus x bretschneideri]
14 Hb_000729_060 0.1684673856 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001205_090 0.1689644769 - - PREDICTED: random slug protein 5 [Jatropha curcas]
16 Hb_002200_110 0.169809733 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001001_160 0.1702011795 - - Phosphatidic acid phosphohydrolase 2 isoform 1 [Theobroma cacao]
18 Hb_000230_110 0.1707959055 - - PREDICTED: uncharacterized protein LOC105647634 [Jatropha curcas]
19 Hb_001198_090 0.1709645388 - - PREDICTED: uncharacterized protein LOC105633343 [Jatropha curcas]
20 Hb_006452_060 0.1727770351 - - transferase, transferring glycosyl groups, putative [Ricinus communis]

Gene co-expression network

sample Hb_003893_170 Hb_003893_170 Hb_008453_060 Hb_008453_060 Hb_003893_170--Hb_008453_060 Hb_003751_110 Hb_003751_110 Hb_003893_170--Hb_003751_110 Hb_004032_240 Hb_004032_240 Hb_003893_170--Hb_004032_240 Hb_001439_120 Hb_001439_120 Hb_003893_170--Hb_001439_120 Hb_000733_060 Hb_000733_060 Hb_003893_170--Hb_000733_060 Hb_008453_020 Hb_008453_020 Hb_003893_170--Hb_008453_020 Hb_000556_080 Hb_000556_080 Hb_008453_060--Hb_000556_080 Hb_008453_060--Hb_001439_120 Hb_023226_060 Hb_023226_060 Hb_008453_060--Hb_023226_060 Hb_010174_130 Hb_010174_130 Hb_008453_060--Hb_010174_130 Hb_005918_040 Hb_005918_040 Hb_008453_060--Hb_005918_040 Hb_015456_020 Hb_015456_020 Hb_003751_110--Hb_015456_020 Hb_001452_140 Hb_001452_140 Hb_003751_110--Hb_001452_140 Hb_010931_110 Hb_010931_110 Hb_003751_110--Hb_010931_110 Hb_001341_040 Hb_001341_040 Hb_003751_110--Hb_001341_040 Hb_003751_110--Hb_004032_240 Hb_000958_010 Hb_000958_010 Hb_004032_240--Hb_000958_010 Hb_004032_240--Hb_010931_110 Hb_004032_240--Hb_008453_020 Hb_019153_040 Hb_019153_040 Hb_004032_240--Hb_019153_040 Hb_186982_030 Hb_186982_030 Hb_004032_240--Hb_186982_030 Hb_007919_050 Hb_007919_050 Hb_001439_120--Hb_007919_050 Hb_001439_120--Hb_000556_080 Hb_000029_030 Hb_000029_030 Hb_001439_120--Hb_000029_030 Hb_010638_020 Hb_010638_020 Hb_001439_120--Hb_010638_020 Hb_182026_020 Hb_182026_020 Hb_001439_120--Hb_182026_020 Hb_021068_050 Hb_021068_050 Hb_001439_120--Hb_021068_050 Hb_005288_160 Hb_005288_160 Hb_000733_060--Hb_005288_160 Hb_000733_060--Hb_023226_060 Hb_002631_050 Hb_002631_050 Hb_000733_060--Hb_002631_050 Hb_022256_040 Hb_022256_040 Hb_000733_060--Hb_022256_040 Hb_000768_030 Hb_000768_030 Hb_000733_060--Hb_000768_030 Hb_001001_160 Hb_001001_160 Hb_000733_060--Hb_001001_160 Hb_008453_020--Hb_000958_010 Hb_001198_090 Hb_001198_090 Hb_008453_020--Hb_001198_090 Hb_005015_010 Hb_005015_010 Hb_008453_020--Hb_005015_010 Hb_030620_010 Hb_030620_010 Hb_008453_020--Hb_030620_010 Hb_000117_040 Hb_000117_040 Hb_008453_020--Hb_000117_040 Hb_008453_020--Hb_000733_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
32.718 2.86581 2.9904 13.3214 76.2873 21.3602
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
36.3039 22.3449 35.3148 4.23501 2.64609

CAGE analysis