Hb_003893_180

Information

Type -
Description -
Location Contig3893: 169278-169877
Sequence    

Annotation

kegg
ID rcu:RCOM_1505490
description hypothetical protein
nr
ID XP_012090659.1
description PREDICTED: uncharacterized protein LOC105648771 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JFA0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26422 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39014: 169127-170289
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003893_180 0.0 - - PREDICTED: uncharacterized protein LOC105648771 [Jatropha curcas]
2 Hb_005648_020 0.0977434708 - - PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 [Jatropha curcas]
3 Hb_003466_010 0.1017302136 - - PREDICTED: protein NRT1/ PTR FAMILY 2.11-like [Jatropha curcas]
4 Hb_002918_270 0.1019369469 - - PREDICTED: protein E6-like [Populus euphratica]
5 Hb_000093_010 0.1031462618 - - Ubiquinone biosynthesis protein coq-8, putative [Ricinus communis]
6 Hb_002600_120 0.1086185586 - - hypothetical protein JCGZ_25652 [Jatropha curcas]
7 Hb_002701_030 0.1098872778 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
8 Hb_000103_070 0.1118027139 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2-like [Jatropha curcas]
9 Hb_012132_050 0.1148050287 - - PREDICTED: aspartic proteinase PCS1 [Jatropha curcas]
10 Hb_000866_130 0.1149267324 - - hypothetical protein JCGZ_14397 [Jatropha curcas]
11 Hb_001898_040 0.1152280912 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
12 Hb_000395_310 0.1172974555 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
13 Hb_015292_020 0.1174483064 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
14 Hb_002781_040 0.118187145 - - conserved hypothetical protein [Ricinus communis]
15 Hb_009736_020 0.1194860136 - - PREDICTED: UDP-N-acetylglucosamine transferase subunit ALG13 homolog [Jatropha curcas]
16 Hb_050898_030 0.1202366486 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001789_230 0.1203203533 - - conserved hypothetical protein [Ricinus communis]
18 Hb_005542_070 0.1205238156 - - hypothetical protein ZEAMMB73_851878 [Zea mays]
19 Hb_010962_020 0.1219126601 transcription factor TF Family: OFP hypothetical protein RCOM_0815310 [Ricinus communis]
20 Hb_003090_220 0.1221519209 - - PREDICTED: copper transporter 4 [Jatropha curcas]

Gene co-expression network

sample Hb_003893_180 Hb_003893_180 Hb_005648_020 Hb_005648_020 Hb_003893_180--Hb_005648_020 Hb_003466_010 Hb_003466_010 Hb_003893_180--Hb_003466_010 Hb_002918_270 Hb_002918_270 Hb_003893_180--Hb_002918_270 Hb_000093_010 Hb_000093_010 Hb_003893_180--Hb_000093_010 Hb_002600_120 Hb_002600_120 Hb_003893_180--Hb_002600_120 Hb_002701_030 Hb_002701_030 Hb_003893_180--Hb_002701_030 Hb_005648_020--Hb_003466_010 Hb_003607_080 Hb_003607_080 Hb_005648_020--Hb_003607_080 Hb_009736_020 Hb_009736_020 Hb_005648_020--Hb_009736_020 Hb_003849_170 Hb_003849_170 Hb_005648_020--Hb_003849_170 Hb_005648_020--Hb_000093_010 Hb_170077_020 Hb_170077_020 Hb_005648_020--Hb_170077_020 Hb_003466_010--Hb_000093_010 Hb_000866_130 Hb_000866_130 Hb_003466_010--Hb_000866_130 Hb_036520_030 Hb_036520_030 Hb_003466_010--Hb_036520_030 Hb_012132_050 Hb_012132_050 Hb_003466_010--Hb_012132_050 Hb_008021_050 Hb_008021_050 Hb_003466_010--Hb_008021_050 Hb_050898_030 Hb_050898_030 Hb_002918_270--Hb_050898_030 Hb_001789_230 Hb_001789_230 Hb_002918_270--Hb_001789_230 Hb_002918_270--Hb_005648_020 Hb_015292_020 Hb_015292_020 Hb_002918_270--Hb_015292_020 Hb_002918_270--Hb_003466_010 Hb_002918_270--Hb_012132_050 Hb_000093_010--Hb_003607_080 Hb_000093_010--Hb_008021_050 Hb_000395_310 Hb_000395_310 Hb_000093_010--Hb_000395_310 Hb_001688_030 Hb_001688_030 Hb_000093_010--Hb_001688_030 Hb_004531_160 Hb_004531_160 Hb_002600_120--Hb_004531_160 Hb_002600_120--Hb_002701_030 Hb_010142_060 Hb_010142_060 Hb_002600_120--Hb_010142_060 Hb_002600_120--Hb_003849_170 Hb_002600_120--Hb_000093_010 Hb_002600_120--Hb_005648_020 Hb_000017_250 Hb_000017_250 Hb_002701_030--Hb_000017_250 Hb_002701_030--Hb_005648_020 Hb_002701_030--Hb_003849_170 Hb_002701_030--Hb_004531_160 Hb_000997_080 Hb_000997_080 Hb_002701_030--Hb_000997_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0551761 1.15344 4.48079 14.0447 0 0.103425
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.238074 0 0.781066 3.22511

CAGE analysis