Hb_003894_010

Information

Type -
Description -
Location Contig3894: 5605-10387
Sequence    

Annotation

kegg
ID egr:104446290
description vestitone reductase-like
nr
ID CBI38845.3
description unnamed protein product [Vitis vinifera]
swissprot
ID Q40316
description Vestitone reductase OS=Medicago sativa PE=1 SV=1
trembl
ID A0A068VAE3
description Coffea canephora DH200=94 genomic scaffold, scaffold_180 OS=Coffea canephora GN=GSCOC_T00003886001 PE=4 SV=1
Gene Ontology
ID GO:0045552
description vestitone reductase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39015: 5817-7418 , PASA_asmbl_39017: 8346-10386
cDNA
(Sanger)
(ID:Location)		 006_A06.ab1: 5817-6785

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003894_010 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_005116_140 0.1184133987 - - PREDICTED: RAN GTPase-activating protein 1 [Jatropha curcas]
3 Hb_009252_030 0.1226998542 - - PREDICTED: CASP-like protein 4A3 [Jatropha curcas]
4 Hb_183086_030 0.1230378567 - - GTPase-activating protein GYP7 [Gossypium arboreum]
5 Hb_000418_020 0.1233025214 - - PREDICTED: sulfhydryl oxidase 2 isoform X1 [Jatropha curcas]
6 Hb_020586_010 0.1259818609 - - Alpha-N-arabinofuranosidase 1 precursor, putative [Ricinus communis]
7 Hb_002367_110 0.1263503154 - - PREDICTED: cinnamyl alcohol dehydrogenase 1 [Sesamum indicum]
8 Hb_000601_040 0.1267659583 - - PREDICTED: E3 ubiquitin-protein ligase BOI-like [Jatropha curcas]
9 Hb_014361_060 0.1269488471 - - PREDICTED: probable prolyl 4-hydroxylase 9 [Jatropha curcas]
10 Hb_002400_060 0.1296802652 - - PREDICTED: putative clathrin assembly protein At2g25430 [Jatropha curcas]
11 Hb_000003_310 0.1297851894 - - PREDICTED: glycosyltransferase-like KOBITO 1 [Jatropha curcas]
12 Hb_033642_060 0.1315517723 - - PREDICTED: protein CHUP1, chloroplastic [Jatropha curcas]
13 Hb_000684_310 0.1320424389 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720 [Jatropha curcas]
14 Hb_005192_010 0.1320826888 - - PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]
15 Hb_030959_010 0.1327930639 - - cullin, putative [Ricinus communis]
16 Hb_001195_310 0.1332525024 - - ATP binding protein, putative [Ricinus communis]
17 Hb_001998_220 0.1338250189 - - PREDICTED: isoamylase 1, chloroplastic [Jatropha curcas]
18 Hb_132082_010 0.1341917099 - - hypothetical protein VITISV_030895 [Vitis vinifera]
19 Hb_003975_010 0.1349450441 - - PREDICTED: protein RTF2 homolog [Jatropha curcas]
20 Hb_000138_060 0.135081729 - - PREDICTED: protein trichome birefringence [Jatropha curcas]

Gene co-expression network

sample Hb_003894_010 Hb_003894_010 Hb_005116_140 Hb_005116_140 Hb_003894_010--Hb_005116_140 Hb_009252_030 Hb_009252_030 Hb_003894_010--Hb_009252_030 Hb_183086_030 Hb_183086_030 Hb_003894_010--Hb_183086_030 Hb_000418_020 Hb_000418_020 Hb_003894_010--Hb_000418_020 Hb_020586_010 Hb_020586_010 Hb_003894_010--Hb_020586_010 Hb_002367_110 Hb_002367_110 Hb_003894_010--Hb_002367_110 Hb_030959_010 Hb_030959_010 Hb_005116_140--Hb_030959_010 Hb_002805_090 Hb_002805_090 Hb_005116_140--Hb_002805_090 Hb_000120_860 Hb_000120_860 Hb_005116_140--Hb_000120_860 Hb_009674_050 Hb_009674_050 Hb_005116_140--Hb_009674_050 Hb_002311_130 Hb_002311_130 Hb_005116_140--Hb_002311_130 Hb_000025_500 Hb_000025_500 Hb_005116_140--Hb_000025_500 Hb_001029_040 Hb_001029_040 Hb_009252_030--Hb_001029_040 Hb_001754_020 Hb_001754_020 Hb_009252_030--Hb_001754_020 Hb_005977_100 Hb_005977_100 Hb_009252_030--Hb_005977_100 Hb_000265_140 Hb_000265_140 Hb_009252_030--Hb_000265_140 Hb_001946_180 Hb_001946_180 Hb_009252_030--Hb_001946_180 Hb_000058_110 Hb_000058_110 Hb_009252_030--Hb_000058_110 Hb_033642_060 Hb_033642_060 Hb_183086_030--Hb_033642_060 Hb_022250_010 Hb_022250_010 Hb_183086_030--Hb_022250_010 Hb_001801_020 Hb_001801_020 Hb_183086_030--Hb_001801_020 Hb_000359_190 Hb_000359_190 Hb_183086_030--Hb_000359_190 Hb_000922_060 Hb_000922_060 Hb_183086_030--Hb_000922_060 Hb_001246_130 Hb_001246_130 Hb_183086_030--Hb_001246_130 Hb_000256_230 Hb_000256_230 Hb_000418_020--Hb_000256_230 Hb_000665_170 Hb_000665_170 Hb_000418_020--Hb_000665_170 Hb_002687_200 Hb_002687_200 Hb_000418_020--Hb_002687_200 Hb_021576_070 Hb_021576_070 Hb_000418_020--Hb_021576_070 Hb_002739_120 Hb_002739_120 Hb_000418_020--Hb_002739_120 Hb_003777_030 Hb_003777_030 Hb_000418_020--Hb_003777_030 Hb_001195_310 Hb_001195_310 Hb_020586_010--Hb_001195_310 Hb_001969_140 Hb_001969_140 Hb_020586_010--Hb_001969_140 Hb_002129_020 Hb_002129_020 Hb_020586_010--Hb_002129_020 Hb_000003_310 Hb_000003_310 Hb_020586_010--Hb_000003_310 Hb_001216_110 Hb_001216_110 Hb_020586_010--Hb_001216_110 Hb_000679_040 Hb_000679_040 Hb_020586_010--Hb_000679_040 Hb_002072_010 Hb_002072_010 Hb_002367_110--Hb_002072_010 Hb_031931_020 Hb_031931_020 Hb_002367_110--Hb_031931_020 Hb_030565_110 Hb_030565_110 Hb_002367_110--Hb_030565_110 Hb_002367_110--Hb_000003_310 Hb_023765_010 Hb_023765_010 Hb_002367_110--Hb_023765_010 Hb_000674_010 Hb_000674_010 Hb_002367_110--Hb_000674_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.4534 37.4678 27.1628 95.7959 21.3282 16.3423
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.3564 13.7632 8.86542 40.5666 76.6848

CAGE analysis