Hb_003894_040

Information

Type -
Description -
Location Contig3894: 21877-26770
Sequence    

Annotation

kegg
ID rcu:RCOM_1612160
description nucleotide binding protein, putative
nr
ID XP_002511720.1
description nucleotide binding protein, putative [Ricinus communis]
swissprot
ID Q9Y4P3
description Transducin beta-like protein 2 OS=Homo sapiens GN=TBL2 PE=1 SV=1
trembl
ID B9RDD1
description Nucleotide binding protein, putative OS=Ricinus communis GN=RCOM_1612160 PE=4 SV=1
Gene Ontology
ID GO:0005783
description transducin beta-like protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39020: 21290-21797 , PASA_asmbl_39021: 22016-26521
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003894_040 0.0 - - nucleotide binding protein, putative [Ricinus communis]
2 Hb_002805_060 0.0876926306 - - PREDICTED: signal peptide peptidase [Jatropha curcas]
3 Hb_000599_170 0.0929158391 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2-like isoform X2 [Populus euphratica]
4 Hb_018202_050 0.0945207066 - - PREDICTED: tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A [Jatropha curcas]
5 Hb_027380_030 0.0957540409 - - Endoplasmic oxidoreductin-1 precursor, putative [Ricinus communis]
6 Hb_001301_220 0.096212507 - - PREDICTED: polyadenylate-binding protein-interacting protein 4 [Jatropha curcas]
7 Hb_006915_020 0.0970562836 - - PREDICTED: formamidopyrimidine-DNA glycosylase isoform X1 [Jatropha curcas]
8 Hb_002092_100 0.0999542525 - - PREDICTED: actin-related protein 4-like [Jatropha curcas]
9 Hb_000608_350 0.1006907165 - - PREDICTED: ER membrane protein complex subunit 10 [Jatropha curcas]
10 Hb_000735_050 0.1050670625 - - PREDICTED: E3 ubiquitin-protein ligase CHIP [Jatropha curcas]
11 Hb_001369_350 0.108213539 - - Cisplatin resistance-associated overexpressed protein, putative [Ricinus communis]
12 Hb_000086_560 0.1126838662 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase SUVR2 isoform X2 [Jatropha curcas]
13 Hb_002374_320 0.1130836297 - - hypothetical protein JCGZ_12107 [Jatropha curcas]
14 Hb_002681_170 0.1132123833 - - PREDICTED: probable methyltransferase PMT9 [Jatropha curcas]
15 Hb_001508_020 0.1145290754 - - myosin vIII, putative [Ricinus communis]
16 Hb_002896_060 0.1148832249 - - PREDICTED: synaptotagmin-2 [Jatropha curcas]
17 Hb_000453_140 0.1153448408 - - hypothetical protein POPTR_0009s02600g [Populus trichocarpa]
18 Hb_000579_060 0.1153540181 - - PREDICTED: uncharacterized protein LOC105633849 isoform X1 [Jatropha curcas]
19 Hb_005053_010 0.1164691016 - - PREDICTED: protease Do-like 9 [Jatropha curcas]
20 Hb_000021_020 0.1172162757 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Malus domestica]

Gene co-expression network

sample Hb_003894_040 Hb_003894_040 Hb_002805_060 Hb_002805_060 Hb_003894_040--Hb_002805_060 Hb_000599_170 Hb_000599_170 Hb_003894_040--Hb_000599_170 Hb_018202_050 Hb_018202_050 Hb_003894_040--Hb_018202_050 Hb_027380_030 Hb_027380_030 Hb_003894_040--Hb_027380_030 Hb_001301_220 Hb_001301_220 Hb_003894_040--Hb_001301_220 Hb_006915_020 Hb_006915_020 Hb_003894_040--Hb_006915_020 Hb_002805_060--Hb_027380_030 Hb_002092_100 Hb_002092_100 Hb_002805_060--Hb_002092_100 Hb_002805_060--Hb_000599_170 Hb_002681_170 Hb_002681_170 Hb_002805_060--Hb_002681_170 Hb_002896_060 Hb_002896_060 Hb_002805_060--Hb_002896_060 Hb_000599_170--Hb_027380_030 Hb_001051_090 Hb_001051_090 Hb_000599_170--Hb_001051_090 Hb_000599_170--Hb_006915_020 Hb_000599_170--Hb_002092_100 Hb_000347_270 Hb_000347_270 Hb_018202_050--Hb_000347_270 Hb_001369_350 Hb_001369_350 Hb_018202_050--Hb_001369_350 Hb_018202_050--Hb_002092_100 Hb_002902_020 Hb_002902_020 Hb_018202_050--Hb_002902_020 Hb_011918_050 Hb_011918_050 Hb_018202_050--Hb_011918_050 Hb_027380_030--Hb_002896_060 Hb_027380_030--Hb_001051_090 Hb_000453_140 Hb_000453_140 Hb_027380_030--Hb_000453_140 Hb_027380_030--Hb_006915_020 Hb_001832_130 Hb_001832_130 Hb_001301_220--Hb_001832_130 Hb_143629_150 Hb_143629_150 Hb_001301_220--Hb_143629_150 Hb_001077_030 Hb_001077_030 Hb_001301_220--Hb_001077_030 Hb_002042_030 Hb_002042_030 Hb_001301_220--Hb_002042_030 Hb_005053_010 Hb_005053_010 Hb_001301_220--Hb_005053_010 Hb_000718_070 Hb_000718_070 Hb_001301_220--Hb_000718_070 Hb_006915_020--Hb_002092_100 Hb_000021_020 Hb_000021_020 Hb_006915_020--Hb_000021_020 Hb_000165_140 Hb_000165_140 Hb_006915_020--Hb_000165_140 Hb_006915_020--Hb_000453_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.6384 20.8892 26.0926 24.83 35.7346 28.3456
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.80461 5.56357 4.11543 16.0419 10.9117

CAGE analysis