Hb_003894_060

Information

Type -
Description -
Location Contig3894: 47021-48586
Sequence    

Annotation

kegg
ID rcu:RCOM_1612210
description hypothetical protein
nr
ID XP_002511722.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RDD4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1612210 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39023: 47051-48549
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003894_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001663_130 0.0828692518 - - acyl-CoA thioesterase, putative [Ricinus communis]
3 Hb_003683_030 0.0903077053 - - PREDICTED: uridine-cytidine kinase C isoform X1 [Jatropha curcas]
4 Hb_005214_070 0.0916531334 - - PREDICTED: fatty acid amide hydrolase [Jatropha curcas]
5 Hb_000093_140 0.1057667419 - - PREDICTED: fructokinase-like 2, chloroplastic [Jatropha curcas]
6 Hb_001001_090 0.1086535626 - - PREDICTED: uncharacterized protein LOC105633658 [Jatropha curcas]
7 Hb_002432_050 0.1136837134 - - PREDICTED: uncharacterized protein LOC105648523 [Jatropha curcas]
8 Hb_001689_050 0.1141267874 - - PREDICTED: cytochrome P450 CYP749A22-like [Prunus mume]
9 Hb_000594_060 0.1144286666 - - PREDICTED: uncharacterized protein LOC105641988 [Jatropha curcas]
10 Hb_002447_050 0.1184585492 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_004837_210 0.1220592528 - - PREDICTED: calcium-dependent protein kinase 8-like [Jatropha curcas]
12 Hb_007594_080 0.1229372063 - - PREDICTED: polygalacturonate 4-alpha-galacturonosyltransferase [Jatropha curcas]
13 Hb_050847_040 0.125602197 - - PREDICTED: uncharacterized protein LOC105649141 [Jatropha curcas]
14 Hb_003849_160 0.1261669254 - - PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Jatropha curcas]
15 Hb_003175_070 0.1265008768 - - pyrophosphate-dependent phosphofructokinase, partial [Hevea brasiliensis]
16 Hb_000749_200 0.1274852651 - - PREDICTED: plant intracellular Ras-group-related LRR protein 6 isoform X1 [Jatropha curcas]
17 Hb_004545_080 0.1284093783 - - protein with unknown function [Ricinus communis]
18 Hb_001953_100 0.1293619887 - - PREDICTED: glutamate-1-semialdehyde 2,1-aminomutase 2, chloroplastic [Jatropha curcas]
19 Hb_002301_210 0.129822253 - - PREDICTED: receptor-like protein kinase At5g59670 isoform X2 [Jatropha curcas]
20 Hb_000076_250 0.1298439186 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003894_060 Hb_003894_060 Hb_001663_130 Hb_001663_130 Hb_003894_060--Hb_001663_130 Hb_003683_030 Hb_003683_030 Hb_003894_060--Hb_003683_030 Hb_005214_070 Hb_005214_070 Hb_003894_060--Hb_005214_070 Hb_000093_140 Hb_000093_140 Hb_003894_060--Hb_000093_140 Hb_001001_090 Hb_001001_090 Hb_003894_060--Hb_001001_090 Hb_002432_050 Hb_002432_050 Hb_003894_060--Hb_002432_050 Hb_000300_560 Hb_000300_560 Hb_001663_130--Hb_000300_560 Hb_001160_110 Hb_001160_110 Hb_001663_130--Hb_001160_110 Hb_007594_080 Hb_007594_080 Hb_001663_130--Hb_007594_080 Hb_002447_050 Hb_002447_050 Hb_001663_130--Hb_002447_050 Hb_011188_010 Hb_011188_010 Hb_001663_130--Hb_011188_010 Hb_000749_200 Hb_000749_200 Hb_003683_030--Hb_000749_200 Hb_001689_050 Hb_001689_050 Hb_003683_030--Hb_001689_050 Hb_004837_210 Hb_004837_210 Hb_003683_030--Hb_004837_210 Hb_001250_040 Hb_001250_040 Hb_003683_030--Hb_001250_040 Hb_001953_100 Hb_001953_100 Hb_003683_030--Hb_001953_100 Hb_005214_070--Hb_001001_090 Hb_007290_070 Hb_007290_070 Hb_005214_070--Hb_007290_070 Hb_000649_330 Hb_000649_330 Hb_005214_070--Hb_000649_330 Hb_005214_070--Hb_001663_130 Hb_000748_110 Hb_000748_110 Hb_005214_070--Hb_000748_110 Hb_004346_040 Hb_004346_040 Hb_000093_140--Hb_004346_040 Hb_003055_070 Hb_003055_070 Hb_000093_140--Hb_003055_070 Hb_007765_130 Hb_007765_130 Hb_000093_140--Hb_007765_130 Hb_000093_140--Hb_005214_070 Hb_004324_120 Hb_004324_120 Hb_000093_140--Hb_004324_120 Hb_001001_090--Hb_000649_330 Hb_009078_020 Hb_009078_020 Hb_001001_090--Hb_009078_020 Hb_001001_090--Hb_011188_010 Hb_000015_150 Hb_000015_150 Hb_001001_090--Hb_000015_150 Hb_001001_090--Hb_001663_130 Hb_005527_060 Hb_005527_060 Hb_002432_050--Hb_005527_060 Hb_000594_060 Hb_000594_060 Hb_002432_050--Hb_000594_060 Hb_002432_050--Hb_001663_130 Hb_013968_010 Hb_013968_010 Hb_002432_050--Hb_013968_010 Hb_002432_050--Hb_011188_010 Hb_001117_080 Hb_001117_080 Hb_002432_050--Hb_001117_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.35879 10.5946 33.4119 14.9143 3.66939 5.59811
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.69558 1.43209 0.807831 7.8012 21.1258

CAGE analysis