Hb_003900_040

Information

Type -
Description -
Location Contig3900: 100978-111004
Sequence    

Annotation

kegg
ID vvi:100853955
description uncharacterized LOC100853955
nr
ID BAG72148.1
description hypothetical protein [Lotus japonicus]
swissprot
ID Q99315
description Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-G PE=1 SV=3
trembl
ID B5U9V8
description Putative uncharacterized protein OS=Lotus japonicus PE=4 SV=1
Gene Ontology
ID GO:0003676
description rna-directed dna polymerase (reverse transcriptase) chromo zinc cchc-type peptidase active site polynucleotidyl ribonuclease h fold

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003900_040 0.0 - - hypothetical protein [Lotus japonicus]
2 Hb_004899_210 0.0732014548 - - PREDICTED: respiratory burst oxidase homolog protein E [Jatropha curcas]
3 Hb_144027_010 0.1197000273 - - -
4 Hb_180214_010 0.122758186 - - PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]
5 Hb_032717_090 0.1264102885 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001250_030 0.1322061218 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003169_040 0.1333743672 - - -
8 Hb_001383_080 0.1351893483 - - OSJNBa0019D11.8 [Oryza sativa Japonica Group]
9 Hb_017640_010 0.1359587581 - - hypothetical protein JCGZ_18815 [Jatropha curcas]
10 Hb_008642_050 0.1384349887 - - -
11 Hb_007575_020 0.1556149588 - - cytochrome P450, putative [Ricinus communis]
12 Hb_045785_010 0.1580272224 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
13 Hb_023738_010 0.1593209536 - - Concanavalin A-like lectin protein kinase family protein [Theobroma cacao]
14 Hb_000136_080 0.1630192759 - - hypothetical protein AALP_AA8G499800 [Arabis alpina]
15 Hb_007575_010 0.16302485 - - PREDICTED: cytochrome P450 71A1 [Vitis vinifera]
16 Hb_007543_020 0.1636210857 - - PREDICTED: uncharacterized protein LOC104229533, partial [Nicotiana sylvestris]
17 Hb_003414_040 0.1689859096 - - hypothetical protein VITISV_016691 [Vitis vinifera]
18 Hb_099878_040 0.1707966149 - - PREDICTED: uncharacterized protein LOC102703670 [Oryza brachyantha]
19 Hb_000975_060 0.1728646363 - - -
20 Hb_001174_050 0.1733386034 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_003900_040 Hb_003900_040 Hb_004899_210 Hb_004899_210 Hb_003900_040--Hb_004899_210 Hb_144027_010 Hb_144027_010 Hb_003900_040--Hb_144027_010 Hb_180214_010 Hb_180214_010 Hb_003900_040--Hb_180214_010 Hb_032717_090 Hb_032717_090 Hb_003900_040--Hb_032717_090 Hb_001250_030 Hb_001250_030 Hb_003900_040--Hb_001250_030 Hb_003169_040 Hb_003169_040 Hb_003900_040--Hb_003169_040 Hb_004899_210--Hb_144027_010 Hb_007575_020 Hb_007575_020 Hb_004899_210--Hb_007575_020 Hb_004899_210--Hb_001250_030 Hb_008642_050 Hb_008642_050 Hb_004899_210--Hb_008642_050 Hb_017640_010 Hb_017640_010 Hb_004899_210--Hb_017640_010 Hb_117001_010 Hb_117001_010 Hb_144027_010--Hb_117001_010 Hb_001383_080 Hb_001383_080 Hb_144027_010--Hb_001383_080 Hb_144027_010--Hb_017640_010 Hb_144027_010--Hb_003169_040 Hb_180214_010--Hb_003169_040 Hb_000512_050 Hb_000512_050 Hb_180214_010--Hb_000512_050 Hb_180214_010--Hb_032717_090 Hb_005623_060 Hb_005623_060 Hb_180214_010--Hb_005623_060 Hb_180214_010--Hb_001383_080 Hb_032717_090--Hb_003169_040 Hb_008680_010 Hb_008680_010 Hb_032717_090--Hb_008680_010 Hb_032717_090--Hb_001383_080 Hb_004235_020 Hb_004235_020 Hb_032717_090--Hb_004235_020 Hb_093388_010 Hb_093388_010 Hb_001250_030--Hb_093388_010 Hb_029510_060 Hb_029510_060 Hb_001250_030--Hb_029510_060 Hb_023738_010 Hb_023738_010 Hb_001250_030--Hb_023738_010 Hb_003311_020 Hb_003311_020 Hb_001250_030--Hb_003311_020 Hb_003414_040 Hb_003414_040 Hb_001250_030--Hb_003414_040 Hb_000432_020 Hb_000432_020 Hb_001250_030--Hb_000432_020 Hb_003169_040--Hb_000512_050 Hb_003169_040--Hb_005623_060 Hb_150516_010 Hb_150516_010 Hb_003169_040--Hb_150516_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.1038 0.0171122 0.00651815 0 0.00775695
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0407798 0.373837

CAGE analysis