Hb_003900_050

Information

Type transcription factor
Description TF Family: HSF
Location Contig3900: 153253-155974
Sequence    

Annotation

kegg
ID pop:POPTR_0016s05680g
description POPTRDRAFT_576364; Heat Stress Transcription Factor family protein
nr
ID XP_002323320.2
description Heat Stress Transcription Factor family protein [Populus trichocarpa]
swissprot
ID O22230
description Heat stress transcription factor B-3 OS=Arabidopsis thaliana GN=HSFB3 PE=2 SV=1
trembl
ID B9II85
description Heat Stress Transcription Factor family protein OS=Populus trichocarpa GN=POPTR_0016s05680g PE=3 SV=2
Gene Ontology
ID GO:0005634
description heat stress transcription factor b-3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39144: 153217-155901
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003900_050 0.0 transcription factor TF Family: HSF Heat Stress Transcription Factor family protein [Populus trichocarpa]
2 Hb_004200_040 0.063542521 - - laccase, putative [Ricinus communis]
3 Hb_004463_040 0.0719916504 - - -
4 Hb_000205_210 0.0804615875 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein At4g27190-like isoform X1 [Citrus sinensis]
5 Hb_000140_260 0.0949712553 - - PREDICTED: uncharacterized protein LOC105642920 [Jatropha curcas]
6 Hb_004881_060 0.0967121991 transcription factor TF Family: WRKY hypothetical protein POPTR_0005s22480g [Populus trichocarpa]
7 Hb_000684_020 0.102719072 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
8 Hb_000422_020 0.1028541615 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
9 Hb_027141_010 0.1094451237 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
10 Hb_007894_260 0.1141333828 - - receptor protein kinase, putative [Ricinus communis]
11 Hb_004190_010 0.1166464998 - - unnamed protein product [Vitis vinifera]
12 Hb_110218_010 0.1174928537 - - PREDICTED: uncharacterized protein LOC104428128 [Eucalyptus grandis]
13 Hb_009012_020 0.118635465 - - PREDICTED: 7-deoxyloganetic acid glucosyltransferase-like [Populus euphratica]
14 Hb_020332_040 0.1219474322 - - PREDICTED: alcohol dehydrogenase 1-like [Jatropha curcas]
15 Hb_000984_080 0.1298760362 - - PREDICTED: receptor-like protein kinase HAIKU2 [Jatropha curcas]
16 Hb_000683_010 0.1311345143 - - Interleukin-1 receptor-associated kinase, putative [Ricinus communis]
17 Hb_001104_210 0.1321584489 - - hypothetical protein JCGZ_23620 [Jatropha curcas]
18 Hb_002048_010 0.1326492175 - - unknown [Lotus japonicus]
19 Hb_008768_010 0.1327204016 - - PREDICTED: equilibrative nucleotide transporter 8 isoform X1 [Jatropha curcas]
20 Hb_076895_020 0.1354468403 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_003900_050 Hb_003900_050 Hb_004200_040 Hb_004200_040 Hb_003900_050--Hb_004200_040 Hb_004463_040 Hb_004463_040 Hb_003900_050--Hb_004463_040 Hb_000205_210 Hb_000205_210 Hb_003900_050--Hb_000205_210 Hb_000140_260 Hb_000140_260 Hb_003900_050--Hb_000140_260 Hb_004881_060 Hb_004881_060 Hb_003900_050--Hb_004881_060 Hb_000684_020 Hb_000684_020 Hb_003900_050--Hb_000684_020 Hb_004200_040--Hb_000140_260 Hb_004200_040--Hb_000205_210 Hb_004200_040--Hb_004463_040 Hb_027141_010 Hb_027141_010 Hb_004200_040--Hb_027141_010 Hb_004200_040--Hb_000684_020 Hb_000976_020 Hb_000976_020 Hb_004463_040--Hb_000976_020 Hb_009012_020 Hb_009012_020 Hb_004463_040--Hb_009012_020 Hb_020332_040 Hb_020332_040 Hb_004463_040--Hb_020332_040 Hb_002048_010 Hb_002048_010 Hb_004463_040--Hb_002048_010 Hb_000205_210--Hb_000140_260 Hb_000205_210--Hb_027141_010 Hb_001105_200 Hb_001105_200 Hb_000205_210--Hb_001105_200 Hb_000984_080 Hb_000984_080 Hb_000205_210--Hb_000984_080 Hb_000140_260--Hb_027141_010 Hb_076895_020 Hb_076895_020 Hb_000140_260--Hb_076895_020 Hb_000539_080 Hb_000539_080 Hb_000140_260--Hb_000539_080 Hb_000140_260--Hb_000984_080 Hb_003090_180 Hb_003090_180 Hb_004881_060--Hb_003090_180 Hb_001104_210 Hb_001104_210 Hb_004881_060--Hb_001104_210 Hb_004881_060--Hb_000205_210 Hb_056101_010 Hb_056101_010 Hb_004881_060--Hb_056101_010 Hb_004881_060--Hb_001105_200 Hb_110218_010 Hb_110218_010 Hb_000684_020--Hb_110218_010 Hb_000684_020--Hb_009012_020 Hb_000684_020--Hb_004463_040 Hb_002553_120 Hb_002553_120 Hb_000684_020--Hb_002553_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 17.8301 2.01434 7.36246 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0840749 0 0 83.5903 10.6576

CAGE analysis