Hb_003902_070

Information

Type -
Description -
Location Contig3902: 98498-101396
Sequence    

Annotation

kegg
ID rcu:RCOM_0553640
description hypothetical protein
nr
ID XP_002525125.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SIN2
description Protein trichome birefringence-like 39 OS=Arabidopsis thaliana GN=TBL39 PE=2 SV=1
trembl
ID B9SGK6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0553640 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003902_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000030_080 0.0670071469 - - PREDICTED: uncharacterized protein LOC105632640 [Jatropha curcas]
3 Hb_004592_030 0.0740717883 - - unknown [Lotus japonicus]
4 Hb_000261_550 0.0759134727 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2-like [Jatropha curcas]
5 Hb_000077_300 0.0772621192 - - PREDICTED: expansin-B3-like [Jatropha curcas]
6 Hb_001454_270 0.0776280996 - - PREDICTED: condensin-2 complex subunit D3 isoform X2 [Jatropha curcas]
7 Hb_002757_010 0.0823641927 - - hypothetical protein POPTR_0013s10580g [Populus trichocarpa]
8 Hb_002700_030 0.0891647763 - - PREDICTED: serine carboxypeptidase-like 45 [Jatropha curcas]
9 Hb_004197_020 0.093353198 - - Anthocyanin 5-aromatic acyltransferase, putative [Ricinus communis]
10 Hb_005116_120 0.0971137663 - - PREDICTED: uncharacterized protein LOC105649997 isoform X2 [Jatropha curcas]
11 Hb_181744_010 0.1044206272 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
12 Hb_001263_030 0.1099679439 - - PREDICTED: uncharacterized protein At3g28850-like [Jatropha curcas]
13 Hb_005542_150 0.1159799325 - - PREDICTED: uncharacterized protein LOC105649178 [Jatropha curcas]
14 Hb_000085_360 0.1162003646 - - PREDICTED: kinesin-like protein KIN12B [Jatropha curcas]
15 Hb_000480_060 0.1183194203 - - PREDICTED: kinesin-like protein NACK1 [Jatropha curcas]
16 Hb_004631_040 0.1191453938 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
17 Hb_000701_020 0.1210540235 - - PREDICTED: protein ENDOSPERM DEFECTIVE 1-like isoform X1 [Jatropha curcas]
18 Hb_003106_090 0.1231183488 transcription factor TF Family: E2F-DP E2F, putative [Ricinus communis]
19 Hb_001076_010 0.1244657303 transcription factor TF Family: B3 DNA binding protein, putative [Ricinus communis]
20 Hb_001279_110 0.1249777841 - - PREDICTED: uncharacterized protein LOC105633338 isoform X4 [Jatropha curcas]

Gene co-expression network

sample Hb_003902_070 Hb_003902_070 Hb_000030_080 Hb_000030_080 Hb_003902_070--Hb_000030_080 Hb_004592_030 Hb_004592_030 Hb_003902_070--Hb_004592_030 Hb_000261_550 Hb_000261_550 Hb_003902_070--Hb_000261_550 Hb_000077_300 Hb_000077_300 Hb_003902_070--Hb_000077_300 Hb_001454_270 Hb_001454_270 Hb_003902_070--Hb_001454_270 Hb_002757_010 Hb_002757_010 Hb_003902_070--Hb_002757_010 Hb_000030_080--Hb_004592_030 Hb_001263_030 Hb_001263_030 Hb_000030_080--Hb_001263_030 Hb_000030_080--Hb_001454_270 Hb_001076_010 Hb_001076_010 Hb_000030_080--Hb_001076_010 Hb_004197_020 Hb_004197_020 Hb_000030_080--Hb_004197_020 Hb_004592_030--Hb_004197_020 Hb_004631_040 Hb_004631_040 Hb_004592_030--Hb_004631_040 Hb_000480_060 Hb_000480_060 Hb_004592_030--Hb_000480_060 Hb_000085_360 Hb_000085_360 Hb_004592_030--Hb_000085_360 Hb_000671_020 Hb_000671_020 Hb_000261_550--Hb_000671_020 Hb_005116_120 Hb_005116_120 Hb_000261_550--Hb_005116_120 Hb_000701_020 Hb_000701_020 Hb_000261_550--Hb_000701_020 Hb_000261_550--Hb_004592_030 Hb_000261_550--Hb_002757_010 Hb_000077_300--Hb_002757_010 Hb_002700_030 Hb_002700_030 Hb_000077_300--Hb_002700_030 Hb_001310_060 Hb_001310_060 Hb_000077_300--Hb_001310_060 Hb_080147_070 Hb_080147_070 Hb_000077_300--Hb_080147_070 Hb_000205_180 Hb_000205_180 Hb_000077_300--Hb_000205_180 Hb_001454_270--Hb_002700_030 Hb_003106_090 Hb_003106_090 Hb_001454_270--Hb_003106_090 Hb_001454_270--Hb_001263_030 Hb_001454_270--Hb_004592_030 Hb_002757_010--Hb_002700_030 Hb_002757_010--Hb_000205_180 Hb_062807_010 Hb_062807_010 Hb_002757_010--Hb_062807_010 Hb_002757_010--Hb_005116_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0350246 7.06903 3.87317 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.42025 0.992532

CAGE analysis