Hb_003905_040

Information

Type -
Description -
Location Contig3905: 73345-77052
Sequence    

Annotation

kegg
ID pop:POPTR_0018s11140g
description POPTRDRAFT_912270; hypothetical protein
nr
ID XP_012071578.1
description PREDICTED: heptahelical transmembrane protein 2 [Jatropha curcas]
swissprot
ID Q84N34
description Heptahelical transmembrane protein 2 OS=Arabidopsis thaliana GN=HHP2 PE=2 SV=1
trembl
ID A0A067L2N3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04083 PE=4 SV=1
Gene Ontology
ID GO:0016021
description heptahelical transmembrane protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39156: 73699-77056
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003905_040 0.0 - - PREDICTED: heptahelical transmembrane protein 2 [Jatropha curcas]
2 Hb_149484_010 0.1017340964 transcription factor TF Family: NF-YC PREDICTED: dr1-associated corepressor-like [Eucalyptus grandis]
3 Hb_001357_060 0.1108808982 transcription factor TF Family: Orphans PREDICTED: B-box zinc finger protein 18-like [Cicer arietinum]
4 Hb_002783_140 0.1181730572 - - PREDICTED: uncharacterized protein LOC105635332 [Jatropha curcas]
5 Hb_007193_030 0.1185391832 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ706 isoform X1 [Jatropha curcas]
6 Hb_000402_030 0.1207380734 - - PREDICTED: cysteine-rich receptor-like protein kinase 2 [Jatropha curcas]
7 Hb_001369_020 0.120773943 - - PREDICTED: U-box domain-containing protein 35-like [Jatropha curcas]
8 Hb_073171_050 0.1209638209 transcription factor TF Family: MYB-related PREDICTED: myb-like protein H [Jatropha curcas]
9 Hb_012098_180 0.1219600628 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_20174 [Jatropha curcas]
10 Hb_009476_110 0.1223986896 - - PREDICTED: probable protein phosphatase 2C 25 [Jatropha curcas]
11 Hb_007254_050 0.1235954168 - - PREDICTED: U-box domain-containing protein 28-like [Jatropha curcas]
12 Hb_005080_020 0.1250167652 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]
13 Hb_006052_060 0.1296172195 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
14 Hb_005375_070 0.1315294938 transcription factor TF Family: MYB-related PREDICTED: protein LHY [Jatropha curcas]
15 Hb_002809_120 0.133089953 - - Uncharacterized protein TCM_031281 [Theobroma cacao]
16 Hb_003656_170 0.1339942078 - - PREDICTED: phenylalanine ammonia-lyase-like [Jatropha curcas]
17 Hb_172676_010 0.1341549126 - - PREDICTED: putative disease resistance protein At3g14460 [Jatropha curcas]
18 Hb_005539_100 0.1355738389 - - nucleoside transporter, putative [Ricinus communis]
19 Hb_003430_070 0.1359678176 - - PREDICTED: protein phosphatase 2C 37 [Jatropha curcas]
20 Hb_001623_410 0.1362897205 - - PREDICTED: beta-amylase 1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_003905_040 Hb_003905_040 Hb_149484_010 Hb_149484_010 Hb_003905_040--Hb_149484_010 Hb_001357_060 Hb_001357_060 Hb_003905_040--Hb_001357_060 Hb_002783_140 Hb_002783_140 Hb_003905_040--Hb_002783_140 Hb_007193_030 Hb_007193_030 Hb_003905_040--Hb_007193_030 Hb_000402_030 Hb_000402_030 Hb_003905_040--Hb_000402_030 Hb_001369_020 Hb_001369_020 Hb_003905_040--Hb_001369_020 Hb_006052_060 Hb_006052_060 Hb_149484_010--Hb_006052_060 Hb_003430_070 Hb_003430_070 Hb_149484_010--Hb_003430_070 Hb_005000_050 Hb_005000_050 Hb_149484_010--Hb_005000_050 Hb_149484_010--Hb_000402_030 Hb_005375_070 Hb_005375_070 Hb_149484_010--Hb_005375_070 Hb_002809_120 Hb_002809_120 Hb_001357_060--Hb_002809_120 Hb_001179_010 Hb_001179_010 Hb_001357_060--Hb_001179_010 Hb_001357_060--Hb_002783_140 Hb_000477_110 Hb_000477_110 Hb_001357_060--Hb_000477_110 Hb_000007_440 Hb_000007_440 Hb_001357_060--Hb_000007_440 Hb_002890_320 Hb_002890_320 Hb_002783_140--Hb_002890_320 Hb_033153_040 Hb_033153_040 Hb_002783_140--Hb_033153_040 Hb_005569_030 Hb_005569_030 Hb_002783_140--Hb_005569_030 Hb_003387_080 Hb_003387_080 Hb_002783_140--Hb_003387_080 Hb_073171_050 Hb_073171_050 Hb_002783_140--Hb_073171_050 Hb_004218_080 Hb_004218_080 Hb_007193_030--Hb_004218_080 Hb_007193_030--Hb_001369_020 Hb_001623_410 Hb_001623_410 Hb_007193_030--Hb_001623_410 Hb_007193_030--Hb_073171_050 Hb_005725_280 Hb_005725_280 Hb_007193_030--Hb_005725_280 Hb_002343_020 Hb_002343_020 Hb_000402_030--Hb_002343_020 Hb_000402_030--Hb_005375_070 Hb_001898_010 Hb_001898_010 Hb_000402_030--Hb_001898_010 Hb_005814_010 Hb_005814_010 Hb_000402_030--Hb_005814_010 Hb_007574_050 Hb_007574_050 Hb_000402_030--Hb_007574_050 Hb_001369_020--Hb_073171_050 Hb_028285_020 Hb_028285_020 Hb_001369_020--Hb_028285_020 Hb_005080_020 Hb_005080_020 Hb_001369_020--Hb_005080_020 Hb_001369_020--Hb_001623_410
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.133417 13.161 7.95871 5.39803 0.412948 0.0705826
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.130704 0.479775 0.381298 3.05113 4.94753

CAGE analysis