Hb_003906_020

Information

Type -
Description -
Location Contig3906: 11296-13982
Sequence    

Annotation

kegg
ID rcu:RCOM_1497860
description hypothetical protein
nr
ID XP_012090346.1
description PREDICTED: uncharacterized protein LOC105648535 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9R9J2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1497860 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39157: 11712-13002 , PASA_asmbl_39158: 13442-14157
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003906_020 0.0 - - PREDICTED: uncharacterized protein LOC105648535 [Jatropha curcas]
2 Hb_002641_170 0.1974461137 - - zinc finger protein, putative [Ricinus communis]
3 Hb_000345_060 0.2006954202 - - PREDICTED: REF/SRPP-like protein At3g05500 [Jatropha curcas]
4 Hb_000635_020 0.217271377 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000995_020 0.2315064483 - - conserved hypothetical protein [Ricinus communis]
6 Hb_014720_100 0.2362185445 - - PREDICTED: probable boron transporter 2 [Jatropha curcas]
7 Hb_000367_110 0.2375364237 - - PREDICTED: monodehydroascorbate reductase, chloroplastic isoform X1 [Sesamum indicum]
8 Hb_172426_020 0.2441920683 - - PREDICTED: putative fasciclin-like arabinogalactan protein 20 [Jatropha curcas]
9 Hb_003536_090 0.2465493495 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
10 Hb_006469_110 0.2545181478 - - hypothetical protein JCGZ_12008 [Jatropha curcas]
11 Hb_002164_010 0.2561033316 - - Stellacyanin, putative [Ricinus communis]
12 Hb_000236_210 0.2564966953 - - hypothetical protein JCGZ_01083 [Jatropha curcas]
13 Hb_010866_020 0.2574610903 - - unnamed protein product [Vitis vinifera]
14 Hb_002374_540 0.2593030327 - - RecName: Full=Esterase; AltName: Full=Early nodule-specific protein homolog; AltName: Full=Latex allergen Hev b 13; AltName: Allergen=Hev b 13; Flags: Precursor [Hevea brasiliensis]
15 Hb_000087_010 0.2595429568 - - mta/sah nucleosidase, putative [Ricinus communis]
16 Hb_001157_210 0.2597028625 - - hypothetical protein CISIN_1g038260mg [Citrus sinensis]
17 Hb_005116_090 0.2599052438 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000109_230 0.2599584395 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001673_090 0.260701988 - - hypothetical protein POPTR_0006s21590g [Populus trichocarpa]
20 Hb_004308_020 0.2618599965 - - hypothetical protein POPTR_0005s15590g [Populus trichocarpa]

Gene co-expression network

sample Hb_003906_020 Hb_003906_020 Hb_002641_170 Hb_002641_170 Hb_003906_020--Hb_002641_170 Hb_000345_060 Hb_000345_060 Hb_003906_020--Hb_000345_060 Hb_000635_020 Hb_000635_020 Hb_003906_020--Hb_000635_020 Hb_000995_020 Hb_000995_020 Hb_003906_020--Hb_000995_020 Hb_014720_100 Hb_014720_100 Hb_003906_020--Hb_014720_100 Hb_000367_110 Hb_000367_110 Hb_003906_020--Hb_000367_110 Hb_002641_170--Hb_000367_110 Hb_004218_100 Hb_004218_100 Hb_002641_170--Hb_004218_100 Hb_010866_020 Hb_010866_020 Hb_002641_170--Hb_010866_020 Hb_000347_520 Hb_000347_520 Hb_002641_170--Hb_000347_520 Hb_006469_110 Hb_006469_110 Hb_002641_170--Hb_006469_110 Hb_001635_010 Hb_001635_010 Hb_000345_060--Hb_001635_010 Hb_001157_210 Hb_001157_210 Hb_000345_060--Hb_001157_210 Hb_000179_120 Hb_000179_120 Hb_000345_060--Hb_000179_120 Hb_000345_060--Hb_014720_100 Hb_000345_060--Hb_000367_110 Hb_000236_210 Hb_000236_210 Hb_000635_020--Hb_000236_210 Hb_005116_090 Hb_005116_090 Hb_000635_020--Hb_005116_090 Hb_006816_240 Hb_006816_240 Hb_000635_020--Hb_006816_240 Hb_140627_040 Hb_140627_040 Hb_000635_020--Hb_140627_040 Hb_007100_010 Hb_007100_010 Hb_000635_020--Hb_007100_010 Hb_002228_120 Hb_002228_120 Hb_000635_020--Hb_002228_120 Hb_102772_010 Hb_102772_010 Hb_000995_020--Hb_102772_010 Hb_000622_230 Hb_000622_230 Hb_000995_020--Hb_000622_230 Hb_000622_120 Hb_000622_120 Hb_000995_020--Hb_000622_120 Hb_006816_060 Hb_006816_060 Hb_000995_020--Hb_006816_060 Hb_003371_030 Hb_003371_030 Hb_000995_020--Hb_003371_030 Hb_000617_300 Hb_000617_300 Hb_000995_020--Hb_000617_300 Hb_178968_040 Hb_178968_040 Hb_014720_100--Hb_178968_040 Hb_017002_010 Hb_017002_010 Hb_014720_100--Hb_017002_010 Hb_008695_220 Hb_008695_220 Hb_014720_100--Hb_008695_220 Hb_005529_020 Hb_005529_020 Hb_014720_100--Hb_005529_020 Hb_002686_260 Hb_002686_260 Hb_014720_100--Hb_002686_260 Hb_003875_010 Hb_003875_010 Hb_014720_100--Hb_003875_010 Hb_000367_110--Hb_000347_520 Hb_000188_080 Hb_000188_080 Hb_000367_110--Hb_000188_080 Hb_004308_010 Hb_004308_010 Hb_000367_110--Hb_004308_010 Hb_000367_110--Hb_004218_100 Hb_003988_020 Hb_003988_020 Hb_000367_110--Hb_003988_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.363858 0.0846021 0.907274 5.18706 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.755419 0.06426 0.0916052 0.00638614 0.306336

CAGE analysis