Hb_003906_040

Information

Type transcription factor
Description TF Family: M-type
Location Contig3906: 27224-30258
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa019267mg
description hypothetical protein
nr
ID XP_010555321.1
description PREDICTED: MADS-box protein SOC1-like [Tarenaya hassleriana]
swissprot
ID Q38838
description Agamous-like MADS-box protein AGL14 OS=Arabidopsis thaliana GN=AGL14 PE=1 SV=2
trembl
ID M5XLE8
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa019267mg PE=4 SV=1
Gene Ontology
ID GO:0005634
description mads-box protein soc1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003906_040 0.0 transcription factor TF Family: M-type PREDICTED: MADS-box protein SOC1-like [Tarenaya hassleriana]
2 Hb_178343_010 0.0954007395 - - PREDICTED: two-component response regulator ARR17-like [Jatropha curcas]
3 Hb_012753_140 0.1230475086 - - (S)-N-methylcoclaurine 3'-hydroxylase isozyme, putative [Ricinus communis]
4 Hb_109187_010 0.1419653633 - - PREDICTED: serine/threonine-protein kinase CDL1 [Cucumis sativus]
5 Hb_000589_080 0.1429267552 - - hypothetical protein CICLE_v10032537mg [Citrus clementina]
6 Hb_005694_140 0.1464816987 - - protein with unknown function [Ricinus communis]
7 Hb_116486_010 0.1474673882 - - MADS-box transcription factor, partial [Sapria himalayana]
8 Hb_000629_140 0.1482187125 - - hypothetical protein SORBIDRAFT_04g013083 [Sorghum bicolor]
9 Hb_002105_070 0.1519447464 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000048_120 0.154797259 - - PREDICTED: probable S-adenosylmethionine-dependent methyltransferase At5g37970 [Jatropha curcas]
11 Hb_125152_010 0.1552587447 - - Ankyrin repeat family protein, putative [Theobroma cacao]
12 Hb_000579_160 0.1620668781 - - PREDICTED: uncharacterized protein LOC104216549 isoform X1 [Nicotiana sylvestris]
13 Hb_137821_010 0.1627333749 - - hypothetical protein CISIN_1g034189mg [Citrus sinensis]
14 Hb_012640_010 0.1628982645 - - -
15 Hb_000320_250 0.1659793351 - - hypothetical protein POPTR_0021s00440g [Populus trichocarpa]
16 Hb_000527_090 0.1717007081 - - serine carboxypeptidase, putative [Ricinus communis]
17 Hb_009501_010 0.1720880874 - - Disease resistance protein RPS5, putative [Ricinus communis]
18 Hb_002853_010 0.1723108149 - - conserved hypothetical protein [Ricinus communis]
19 Hb_007441_320 0.1761143796 - - PREDICTED: putative invertase inhibitor [Jatropha curcas]
20 Hb_000027_020 0.1787549878 - - Nonspecific lipid-transfer protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_003906_040 Hb_003906_040 Hb_178343_010 Hb_178343_010 Hb_003906_040--Hb_178343_010 Hb_012753_140 Hb_012753_140 Hb_003906_040--Hb_012753_140 Hb_109187_010 Hb_109187_010 Hb_003906_040--Hb_109187_010 Hb_000589_080 Hb_000589_080 Hb_003906_040--Hb_000589_080 Hb_005694_140 Hb_005694_140 Hb_003906_040--Hb_005694_140 Hb_116486_010 Hb_116486_010 Hb_003906_040--Hb_116486_010 Hb_178343_010--Hb_012753_140 Hb_120496_010 Hb_120496_010 Hb_178343_010--Hb_120496_010 Hb_017524_020 Hb_017524_020 Hb_178343_010--Hb_017524_020 Hb_001277_390 Hb_001277_390 Hb_178343_010--Hb_001277_390 Hb_118941_010 Hb_118941_010 Hb_178343_010--Hb_118941_010 Hb_031822_020 Hb_031822_020 Hb_012753_140--Hb_031822_020 Hb_137821_010 Hb_137821_010 Hb_012753_140--Hb_137821_010 Hb_000629_140 Hb_000629_140 Hb_012753_140--Hb_000629_140 Hb_012753_140--Hb_005694_140 Hb_109187_010--Hb_000589_080 Hb_000579_160 Hb_000579_160 Hb_109187_010--Hb_000579_160 Hb_003050_240 Hb_003050_240 Hb_109187_010--Hb_003050_240 Hb_109187_010--Hb_178343_010 Hb_003092_010 Hb_003092_010 Hb_109187_010--Hb_003092_010 Hb_000589_080--Hb_000579_160 Hb_000589_080--Hb_003092_010 Hb_000002_190 Hb_000002_190 Hb_000589_080--Hb_000002_190 Hb_000003_520 Hb_000003_520 Hb_000589_080--Hb_000003_520 Hb_000005_170 Hb_000005_170 Hb_000589_080--Hb_000005_170 Hb_005694_140--Hb_116486_010 Hb_002105_070 Hb_002105_070 Hb_005694_140--Hb_002105_070 Hb_005694_140--Hb_000629_140 Hb_000048_120 Hb_000048_120 Hb_005694_140--Hb_000048_120 Hb_125152_010 Hb_125152_010 Hb_005694_140--Hb_125152_010 Hb_000027_020 Hb_000027_020 Hb_005694_140--Hb_000027_020 Hb_116486_010--Hb_002105_070 Hb_116486_010--Hb_000629_140 Hb_116486_010--Hb_000048_120 Hb_116486_010--Hb_125152_010 Hb_116486_010--Hb_000027_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.166256 0.156779 0 3.68854 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis