Hb_003906_090

Information

Type -
Description -
Location Contig3906: 53041-54133
Sequence    

Annotation

kegg
ID pop:POPTR_0012s13730g
description POPTRDRAFT_422197; hypothetical protein
nr
ID XP_012090748.1
description PREDICTED: pentatricopeptide repeat-containing protein At4g38010 [Jatropha curcas]
swissprot
ID Q9SZK1
description Pentatricopeptide repeat-containing protein At4g38010 OS=Arabidopsis thaliana GN=PCMP-E45 PE=3 SV=1
trembl
ID B9I4E0
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0012s13730g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003906_090 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At4g38010 [Jatropha curcas]
2 Hb_101808_010 0.1335249461 - - PREDICTED: pentatricopeptide repeat-containing protein At3g49170, chloroplastic [Jatropha curcas]
3 Hb_001189_050 0.1463284023 - - PREDICTED: pentatricopeptide repeat-containing protein At4g01570 [Jatropha curcas]
4 Hb_029510_040 0.1679003374 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g23330 [Vitis vinifera]
5 Hb_000019_060 0.1783811517 - - PREDICTED: pentatricopeptide repeat-containing protein At3g26782, mitochondrial [Jatropha curcas]
6 Hb_007645_080 0.186280656 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g52630 [Jatropha curcas]
7 Hb_001357_010 0.189188583 - - -
8 Hb_019654_090 0.1907135311 - - PREDICTED: pentatricopeptide repeat-containing protein At2g33680 [Jatropha curcas]
9 Hb_012799_100 0.193492703 - - PREDICTED: pentatricopeptide repeat-containing protein At3g29230-like [Jatropha curcas]
10 Hb_000574_350 0.19384959 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Jatropha curcas]
11 Hb_007075_050 0.1940179777 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
12 Hb_000002_050 0.1998543944 - - PREDICTED: pentatricopeptide repeat-containing protein At4g33990 [Jatropha curcas]
13 Hb_011030_020 0.2051349035 - - PREDICTED: pentatricopeptide repeat-containing protein At2g21090 [Jatropha curcas]
14 Hb_000366_090 0.2064970062 - - PREDICTED: pentatricopeptide repeat-containing protein At4g32430, mitochondrial [Jatropha curcas]
15 Hb_010608_050 0.2066704723 - - PREDICTED: uncharacterized protein LOC105645728 [Jatropha curcas]
16 Hb_170698_010 0.2070041953 - - PREDICTED: uncharacterized protein LOC104120414 [Nicotiana tomentosiformis]
17 Hb_000172_560 0.208195342 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750 [Jatropha curcas]
18 Hb_000264_020 0.2094226614 transcription factor TF Family: C2C2-Dof zinc finger protein, putative [Ricinus communis]
19 Hb_025557_030 0.2109194239 - - PREDICTED: pentatricopeptide repeat-containing protein At1g74600, chloroplastic [Jatropha curcas]
20 Hb_001294_010 0.2121777293 - - PREDICTED: E3 ubiquitin-protein ligase RNF170-like [Jatropha curcas]

Gene co-expression network

sample Hb_003906_090 Hb_003906_090 Hb_101808_010 Hb_101808_010 Hb_003906_090--Hb_101808_010 Hb_001189_050 Hb_001189_050 Hb_003906_090--Hb_001189_050 Hb_029510_040 Hb_029510_040 Hb_003906_090--Hb_029510_040 Hb_000019_060 Hb_000019_060 Hb_003906_090--Hb_000019_060 Hb_007645_080 Hb_007645_080 Hb_003906_090--Hb_007645_080 Hb_001357_010 Hb_001357_010 Hb_003906_090--Hb_001357_010 Hb_170698_010 Hb_170698_010 Hb_101808_010--Hb_170698_010 Hb_101808_010--Hb_001189_050 Hb_001294_010 Hb_001294_010 Hb_101808_010--Hb_001294_010 Hb_001898_070 Hb_001898_070 Hb_101808_010--Hb_001898_070 Hb_101808_010--Hb_001357_010 Hb_011030_020 Hb_011030_020 Hb_001189_050--Hb_011030_020 Hb_001189_050--Hb_000019_060 Hb_001493_180 Hb_001493_180 Hb_001189_050--Hb_001493_180 Hb_010608_050 Hb_010608_050 Hb_001189_050--Hb_010608_050 Hb_025557_030 Hb_025557_030 Hb_001189_050--Hb_025557_030 Hb_001189_050--Hb_001357_010 Hb_000432_050 Hb_000432_050 Hb_029510_040--Hb_000432_050 Hb_002756_020 Hb_002756_020 Hb_029510_040--Hb_002756_020 Hb_029510_040--Hb_001357_010 Hb_029510_040--Hb_001189_050 Hb_012799_100 Hb_012799_100 Hb_029510_040--Hb_012799_100 Hb_000723_190 Hb_000723_190 Hb_029510_040--Hb_000723_190 Hb_168319_030 Hb_168319_030 Hb_000019_060--Hb_168319_030 Hb_007075_050 Hb_007075_050 Hb_000019_060--Hb_007075_050 Hb_000366_090 Hb_000366_090 Hb_000019_060--Hb_000366_090 Hb_019654_090 Hb_019654_090 Hb_000019_060--Hb_019654_090 Hb_004128_180 Hb_004128_180 Hb_000019_060--Hb_004128_180 Hb_000019_060--Hb_011030_020 Hb_003185_050 Hb_003185_050 Hb_007645_080--Hb_003185_050 Hb_002235_280 Hb_002235_280 Hb_007645_080--Hb_002235_280 Hb_007645_080--Hb_019654_090 Hb_000072_080 Hb_000072_080 Hb_007645_080--Hb_000072_080 Hb_007645_080--Hb_000366_090 Hb_000349_290 Hb_000349_290 Hb_007645_080--Hb_000349_290 Hb_001357_010--Hb_001294_010 Hb_092107_010 Hb_092107_010 Hb_001357_010--Hb_092107_010 Hb_001357_010--Hb_011030_020 Hb_005162_070 Hb_005162_070 Hb_001357_010--Hb_005162_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.102183 0.153812 0 0.0227844 0.0752338 0.178531
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.117273 0.507229 0.673403 0.0930028 0.186974

CAGE analysis