Hb_003906_120

Information

Type -
Description -
Location Contig3906: 57234-60536
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39161: 56446-58560 , PASA_asmbl_39162: 56446-58287
cDNA
(Sanger)
(ID:Location)		 046_E10r.ab1: 56451-57219

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003906_120 0.0 - - -
2 Hb_003906_110 0.0737890067 - - PREDICTED: molybdenum cofactor sulfurase [Jatropha curcas]
3 Hb_002232_180 0.0896631698 - - PREDICTED: DUF21 domain-containing protein At2g14520-like isoform X1 [Populus euphratica]
4 Hb_095397_010 0.0908219098 - - hypothetical protein 25 [Hevea brasiliensis]
5 Hb_002609_260 0.0956282779 - - CCCH-type zinc finger protein [Hevea brasiliensis]
6 Hb_010931_100 0.0997739491 - - PREDICTED: uncharacterized protein LOC105638669 [Jatropha curcas]
7 Hb_004545_150 0.1002849714 - - PREDICTED: paramyosin [Jatropha curcas]
8 Hb_002989_080 0.1017739441 - - hypothetical protein JCGZ_22462 [Jatropha curcas]
9 Hb_007810_040 0.1051244572 - - PREDICTED: dolichyl-phosphate beta-glucosyltransferase [Jatropha curcas]
10 Hb_011609_190 0.1077470997 - - 14-3-3 protein 2 [Hevea brasiliensis]
11 Hb_007178_010 0.1105216117 - - pseudo-hevein [Hevea brasiliensis]
12 Hb_003304_080 0.1129410488 transcription factor TF Family: bHLH lMYC3 [Hevea brasiliensis]
13 Hb_000264_190 0.1136948145 - - sphingolipid delta 4 desaturase/C-4 hydroxylase protein des2, putative [Ricinus communis]
14 Hb_004738_090 0.1140203654 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001780_060 0.1159141943 - - PREDICTED: uncharacterized protein LOC105631129 [Jatropha curcas]
16 Hb_000249_110 0.1164807331 - - hypothetical protein JCGZ_22462 [Jatropha curcas]
17 Hb_005730_020 0.1178649753 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF3.1-like [Jatropha curcas]
18 Hb_004884_060 0.1234397986 transcription factor TF Family: G2-like PREDICTED: putative Myb family transcription factor At1g14600 [Jatropha curcas]
19 Hb_005488_100 0.1248032949 - - hypothetical protein JCGZ_00295 [Jatropha curcas]
20 Hb_000603_200 0.1254860322 - - PREDICTED: myosin-15 [Jatropha curcas]

Gene co-expression network

sample Hb_003906_120 Hb_003906_120 Hb_003906_110 Hb_003906_110 Hb_003906_120--Hb_003906_110 Hb_002232_180 Hb_002232_180 Hb_003906_120--Hb_002232_180 Hb_095397_010 Hb_095397_010 Hb_003906_120--Hb_095397_010 Hb_002609_260 Hb_002609_260 Hb_003906_120--Hb_002609_260 Hb_010931_100 Hb_010931_100 Hb_003906_120--Hb_010931_100 Hb_004545_150 Hb_004545_150 Hb_003906_120--Hb_004545_150 Hb_004884_060 Hb_004884_060 Hb_003906_110--Hb_004884_060 Hb_003906_110--Hb_010931_100 Hb_007178_010 Hb_007178_010 Hb_003906_110--Hb_007178_010 Hb_002989_080 Hb_002989_080 Hb_003906_110--Hb_002989_080 Hb_000249_110 Hb_000249_110 Hb_003906_110--Hb_000249_110 Hb_002232_180--Hb_007178_010 Hb_007810_040 Hb_007810_040 Hb_002232_180--Hb_007810_040 Hb_002067_160 Hb_002067_160 Hb_002232_180--Hb_002067_160 Hb_002232_180--Hb_002609_260 Hb_004738_090 Hb_004738_090 Hb_002232_180--Hb_004738_090 Hb_005488_100 Hb_005488_100 Hb_002232_180--Hb_005488_100 Hb_095397_010--Hb_007810_040 Hb_003304_080 Hb_003304_080 Hb_095397_010--Hb_003304_080 Hb_095397_010--Hb_002232_180 Hb_000050_120 Hb_000050_120 Hb_095397_010--Hb_000050_120 Hb_043637_010 Hb_043637_010 Hb_095397_010--Hb_043637_010 Hb_000264_190 Hb_000264_190 Hb_002609_260--Hb_000264_190 Hb_002609_260--Hb_010931_100 Hb_005730_020 Hb_005730_020 Hb_002609_260--Hb_005730_020 Hb_002609_260--Hb_005488_100 Hb_027751_020 Hb_027751_020 Hb_002609_260--Hb_027751_020 Hb_000563_540 Hb_000563_540 Hb_002609_260--Hb_000563_540 Hb_010931_100--Hb_000264_190 Hb_010931_100--Hb_004545_150 Hb_010931_100--Hb_000563_540 Hb_010931_100--Hb_005488_100 Hb_010931_100--Hb_027751_020 Hb_004545_150--Hb_002609_260 Hb_004545_150--Hb_002989_080 Hb_004545_150--Hb_000264_190 Hb_004545_150--Hb_005488_100 Hb_004545_150--Hb_000563_540
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
56.211 1.69161 1.06676 0.758365 54.0077 33.5543
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.3437 14.5043 34.6334 2.47024 0.933612

CAGE analysis