Hb_003906_160

Information

Type -
Description -
Location Contig3906: 84704-86528
Sequence    

Annotation

kegg
ID vvi:100247077
description pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like
nr
ID XP_012090337.1
description PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like [Jatropha curcas]
swissprot
ID Q9SJZ3
description Pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E28 PE=2 SV=1
trembl
ID A0A067JS24
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26170 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39165: 85904-86318
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003906_160 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like [Jatropha curcas]
2 Hb_002701_040 0.0939731949 - - PREDICTED: auxin transport protein BIG [Jatropha curcas]
3 Hb_000599_190 0.0994549056 transcription factor TF Family: SNF2 DNA repair and recombination protein RAD26, putative [Ricinus communis]
4 Hb_000260_070 0.1068177184 - - kinase, putative [Ricinus communis]
5 Hb_000107_420 0.1110343979 - - PREDICTED: pentatricopeptide repeat-containing protein At2g03880, mitochondrial [Jatropha curcas]
6 Hb_002780_010 0.1117230807 - - PREDICTED: uncharacterized protein LOC105639237 [Jatropha curcas]
7 Hb_001217_050 0.1205833979 - - actin binding protein, putative [Ricinus communis]
8 Hb_007441_220 0.1208981086 - - PREDICTED: eukaryotic translation initiation factor 4G [Jatropha curcas]
9 Hb_002007_160 0.1211866908 - - PREDICTED: uncharacterized protein LOC105647522 [Jatropha curcas]
10 Hb_000866_120 0.1215308617 - - PREDICTED: mediator of RNA polymerase II transcription subunit 12 [Jatropha curcas]
11 Hb_130192_030 0.1217230612 - - PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like [Jatropha curcas]
12 Hb_011716_030 0.1234645564 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g23330 [Populus euphratica]
13 Hb_002276_130 0.1237291173 - - inositol or phosphatidylinositol kinase, putative [Ricinus communis]
14 Hb_009898_010 0.124207704 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105645502 [Jatropha curcas]
15 Hb_002316_150 0.1250798459 transcription factor TF Family: IWS1 PREDICTED: uncharacterized protein LOC105640420 [Jatropha curcas]
16 Hb_006637_050 0.1253728643 - - PREDICTED: ethylene-insensitive protein 2 [Jatropha curcas]
17 Hb_000003_550 0.125406111 - - -
18 Hb_000175_220 0.1263755472 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21065-like [Jatropha curcas]
19 Hb_029142_050 0.1267943255 desease resistance Gene Name: PPR PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
20 Hb_001967_030 0.1274126814 - - PREDICTED: uncharacterized protein LOC105633557 [Jatropha curcas]

Gene co-expression network

sample Hb_003906_160 Hb_003906_160 Hb_002701_040 Hb_002701_040 Hb_003906_160--Hb_002701_040 Hb_000599_190 Hb_000599_190 Hb_003906_160--Hb_000599_190 Hb_000260_070 Hb_000260_070 Hb_003906_160--Hb_000260_070 Hb_000107_420 Hb_000107_420 Hb_003906_160--Hb_000107_420 Hb_002780_010 Hb_002780_010 Hb_003906_160--Hb_002780_010 Hb_001217_050 Hb_001217_050 Hb_003906_160--Hb_001217_050 Hb_001967_030 Hb_001967_030 Hb_002701_040--Hb_001967_030 Hb_006637_050 Hb_006637_050 Hb_002701_040--Hb_006637_050 Hb_130192_030 Hb_130192_030 Hb_002701_040--Hb_130192_030 Hb_004032_380 Hb_004032_380 Hb_002701_040--Hb_004032_380 Hb_000130_040 Hb_000130_040 Hb_002701_040--Hb_000130_040 Hb_002007_160 Hb_002007_160 Hb_000599_190--Hb_002007_160 Hb_145022_010 Hb_145022_010 Hb_000599_190--Hb_145022_010 Hb_001104_190 Hb_001104_190 Hb_000599_190--Hb_001104_190 Hb_004705_020 Hb_004705_020 Hb_000599_190--Hb_004705_020 Hb_000599_190--Hb_001217_050 Hb_009767_080 Hb_009767_080 Hb_000599_190--Hb_009767_080 Hb_003729_030 Hb_003729_030 Hb_000260_070--Hb_003729_030 Hb_013358_010 Hb_013358_010 Hb_000260_070--Hb_013358_010 Hb_000321_150 Hb_000321_150 Hb_000260_070--Hb_000321_150 Hb_000260_070--Hb_002780_010 Hb_000174_290 Hb_000174_290 Hb_000260_070--Hb_000174_290 Hb_000094_310 Hb_000094_310 Hb_000260_070--Hb_000094_310 Hb_000206_240 Hb_000206_240 Hb_000107_420--Hb_000206_240 Hb_001085_060 Hb_001085_060 Hb_000107_420--Hb_001085_060 Hb_007441_220 Hb_007441_220 Hb_000107_420--Hb_007441_220 Hb_004374_070 Hb_004374_070 Hb_000107_420--Hb_004374_070 Hb_002276_130 Hb_002276_130 Hb_000107_420--Hb_002276_130 Hb_000204_210 Hb_000204_210 Hb_000107_420--Hb_000204_210 Hb_002780_010--Hb_002007_160 Hb_009898_010 Hb_009898_010 Hb_002780_010--Hb_009898_010 Hb_002780_010--Hb_009767_080 Hb_002780_010--Hb_000321_150 Hb_001268_380 Hb_001268_380 Hb_002780_010--Hb_001268_380 Hb_000107_490 Hb_000107_490 Hb_001217_050--Hb_000107_490 Hb_000313_120 Hb_000313_120 Hb_001217_050--Hb_000313_120 Hb_010222_070 Hb_010222_070 Hb_001217_050--Hb_010222_070 Hb_000245_040 Hb_000245_040 Hb_001217_050--Hb_000245_040 Hb_004030_080 Hb_004030_080 Hb_001217_050--Hb_004030_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.386013 1.57152 0.157188 0.615606 0.77176 0.776498
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.305531 0.633734 1.19506 0.818863 0.734431

CAGE analysis