Hb_003906_190

Information

Type -
Description -
Location Contig3906: 94880-97754
Sequence    

Annotation

kegg
ID cmo:103484213
description sorbitol dehydrogenase-like
nr
ID KCW46373.1
description hypothetical protein EUGRSUZ_K00213 [Eucalyptus grandis]
swissprot
ID P86884
description Alcohol dehydrogenase class-3 OS=Scyliorhinus canicula PE=1 SV=1
trembl
ID A0A058ZX32
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K00213 PE=3 SV=1
Gene Ontology
ID GO:0008270
description sorbitol dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39168: 95204-97772
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003906_190 0.0 - - hypothetical protein EUGRSUZ_K00213 [Eucalyptus grandis]
2 Hb_002626_040 0.1035468955 - - PREDICTED: inter-alpha-trypsin inhibitor heavy chain H3 isoform X1 [Jatropha curcas]
3 Hb_011465_030 0.1231583572 - - PREDICTED: B2 protein [Jatropha curcas]
4 Hb_000265_250 0.1267126822 - - auxilin, putative [Ricinus communis]
5 Hb_002477_150 0.1293711042 transcription factor TF Family: Alfin-like DNA binding protein, putative [Ricinus communis]
6 Hb_001247_230 0.1382413567 - - nucleic acid binding protein, putative [Ricinus communis]
7 Hb_025306_010 0.1394106224 transcription factor TF Family: MYB-related syringolide-induced protein 1-3-1B [Populus trichocarpa]
8 Hb_000449_050 0.1497284624 - - Protein bem46, putative [Ricinus communis]
9 Hb_001999_250 0.1503352541 - - PREDICTED: uncharacterized protein LOC105133073 isoform X1 [Populus euphratica]
10 Hb_000540_120 0.1521599793 - - PREDICTED: probable serine/threonine-protein kinase RLCKVII [Jatropha curcas]
11 Hb_001504_190 0.1531218351 - - double-stranded RNA binding protein, putative [Ricinus communis]
12 Hb_148209_020 0.1573293142 - - PREDICTED: SWI/SNF complex subunit SWI3D isoform X1 [Jatropha curcas]
13 Hb_001301_320 0.1576580796 - - PREDICTED: uncharacterized protein LOC105632955 [Jatropha curcas]
14 Hb_017075_030 0.1583299 - - helicase, putative [Ricinus communis]
15 Hb_032202_240 0.15900551 - - PREDICTED: F-box protein At4g00755 [Jatropha curcas]
16 Hb_006316_070 0.1631829927 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
17 Hb_005946_170 0.1639674244 - - PREDICTED: FRIGIDA-like protein 4a [Jatropha curcas]
18 Hb_075449_020 0.1649382981 - - PREDICTED: uncharacterized protein LOC105633096 [Jatropha curcas]
19 Hb_000283_130 0.1654377792 - - PREDICTED: PRA1 family protein E-like [Populus euphratica]
20 Hb_001638_040 0.165687836 - - Nucleobase-ascorbate transporter 3 [Glycine soja]

Gene co-expression network

sample Hb_003906_190 Hb_003906_190 Hb_002626_040 Hb_002626_040 Hb_003906_190--Hb_002626_040 Hb_011465_030 Hb_011465_030 Hb_003906_190--Hb_011465_030 Hb_000265_250 Hb_000265_250 Hb_003906_190--Hb_000265_250 Hb_002477_150 Hb_002477_150 Hb_003906_190--Hb_002477_150 Hb_001247_230 Hb_001247_230 Hb_003906_190--Hb_001247_230 Hb_025306_010 Hb_025306_010 Hb_003906_190--Hb_025306_010 Hb_032202_240 Hb_032202_240 Hb_002626_040--Hb_032202_240 Hb_002626_040--Hb_002477_150 Hb_006316_070 Hb_006316_070 Hb_002626_040--Hb_006316_070 Hb_002626_040--Hb_011465_030 Hb_002977_010 Hb_002977_010 Hb_002626_040--Hb_002977_010 Hb_011465_030--Hb_002477_150 Hb_011465_030--Hb_000265_250 Hb_007403_050 Hb_007403_050 Hb_011465_030--Hb_007403_050 Hb_001946_300 Hb_001946_300 Hb_011465_030--Hb_001946_300 Hb_002849_080 Hb_002849_080 Hb_011465_030--Hb_002849_080 Hb_000540_120 Hb_000540_120 Hb_011465_030--Hb_000540_120 Hb_000265_250--Hb_002477_150 Hb_148209_020 Hb_148209_020 Hb_000265_250--Hb_148209_020 Hb_009028_030 Hb_009028_030 Hb_000265_250--Hb_009028_030 Hb_000265_250--Hb_001247_230 Hb_000265_250--Hb_002849_080 Hb_002477_150--Hb_148209_020 Hb_005946_170 Hb_005946_170 Hb_002477_150--Hb_005946_170 Hb_002659_060 Hb_002659_060 Hb_002477_150--Hb_002659_060 Hb_002477_150--Hb_001946_300 Hb_001999_250 Hb_001999_250 Hb_001247_230--Hb_001999_250 Hb_001247_230--Hb_002849_080 Hb_001247_230--Hb_148209_020 Hb_002609_010 Hb_002609_010 Hb_001247_230--Hb_002609_010 Hb_000116_570 Hb_000116_570 Hb_001247_230--Hb_000116_570 Hb_075449_020 Hb_075449_020 Hb_025306_010--Hb_075449_020 Hb_000390_220 Hb_000390_220 Hb_025306_010--Hb_000390_220 Hb_001662_030 Hb_001662_030 Hb_025306_010--Hb_001662_030 Hb_006346_040 Hb_006346_040 Hb_025306_010--Hb_006346_040 Hb_025306_010--Hb_000540_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
376.03 652.975 113.974 65.0341 318.805 358.233
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
308.383 49.7243 59.41 77.4774 74.5963

CAGE analysis