Hb_003906_200

Information

Type -
Description -
Location Contig3906: 98351-106564
Sequence    

Annotation

kegg
ID rcu:RCOM_1497630
description F-box and wd40 domain protein, putative (EC:2.7.11.7)
nr
ID XP_012090334.1
description PREDICTED: zinc finger CCCH domain-containing protein 48 [Jatropha curcas]
swissprot
ID Q9FNZ2
description Zinc finger CCCH domain-containing protein 48 OS=Arabidopsis thaliana GN=ZFWD1 PE=2 SV=1
trembl
ID A0A067JEM3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26167 PE=4 SV=1
Gene Ontology
ID GO:0016905
description zinc finger ccch domain-containing protein 48

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39170: 98293-102631
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003906_200 0.0 - - PREDICTED: zinc finger CCCH domain-containing protein 48 [Jatropha curcas]
2 Hb_112198_010 0.0561941577 - - PREDICTED: F-box protein SKIP22 [Jatropha curcas]
3 Hb_002492_010 0.0610177708 - - PREDICTED: inositol-tetrakisphosphate 1-kinase 2-like [Populus euphratica]
4 Hb_004143_100 0.0610380396 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001473_160 0.0615141876 - - Vesicle-associated membrane protein, putative [Ricinus communis]
6 Hb_000072_120 0.0624196679 - - serine/threonine protein kinase, putative [Ricinus communis]
7 Hb_003544_060 0.0625751742 - - hypothetical protein JCGZ_22100 [Jatropha curcas]
8 Hb_001716_020 0.0626603698 - - hydrolase, putative [Ricinus communis]
9 Hb_003849_110 0.0634707103 - - hypothetical protein JCGZ_17842 [Jatropha curcas]
10 Hb_000868_090 0.0650174124 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 4 [Jatropha curcas]
11 Hb_000029_060 0.0657412097 - - PREDICTED: mRNA-decapping enzyme-like protein [Jatropha curcas]
12 Hb_000521_330 0.0661626261 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002026_210 0.0664667606 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
14 Hb_093458_040 0.0665768483 - - PREDICTED: non-lysosomal glucosylceramidase [Jatropha curcas]
15 Hb_004030_080 0.0673855196 - - hypothetical protein JCGZ_25110 [Jatropha curcas]
16 Hb_002234_090 0.0675576048 - - PREDICTED: probable transcriptional regulator SLK2 [Jatropha curcas]
17 Hb_000069_310 0.0677940954 - - ubiquitin ligase [Cucumis melo subsp. melo]
18 Hb_019863_070 0.0680070422 - - PREDICTED: regulatory-associated protein of TOR 1 isoform X1 [Jatropha curcas]
19 Hb_000329_230 0.0682857649 - - PREDICTED: uncharacterized protein LOC105643152 [Jatropha curcas]
20 Hb_001205_240 0.0692238191 - - PREDICTED: uncharacterized protein LOC105645528 [Jatropha curcas]

Gene co-expression network

sample Hb_003906_200 Hb_003906_200 Hb_112198_010 Hb_112198_010 Hb_003906_200--Hb_112198_010 Hb_002492_010 Hb_002492_010 Hb_003906_200--Hb_002492_010 Hb_004143_100 Hb_004143_100 Hb_003906_200--Hb_004143_100 Hb_001473_160 Hb_001473_160 Hb_003906_200--Hb_001473_160 Hb_000072_120 Hb_000072_120 Hb_003906_200--Hb_000072_120 Hb_003544_060 Hb_003544_060 Hb_003906_200--Hb_003544_060 Hb_004435_030 Hb_004435_030 Hb_112198_010--Hb_004435_030 Hb_000917_230 Hb_000917_230 Hb_112198_010--Hb_000917_230 Hb_004030_080 Hb_004030_080 Hb_112198_010--Hb_004030_080 Hb_000868_090 Hb_000868_090 Hb_112198_010--Hb_000868_090 Hb_005582_040 Hb_005582_040 Hb_112198_010--Hb_005582_040 Hb_001716_020 Hb_001716_020 Hb_002492_010--Hb_001716_020 Hb_001481_060 Hb_001481_060 Hb_002492_010--Hb_001481_060 Hb_000087_060 Hb_000087_060 Hb_002492_010--Hb_000087_060 Hb_004994_240 Hb_004994_240 Hb_002492_010--Hb_004994_240 Hb_001089_050 Hb_001089_050 Hb_002492_010--Hb_001089_050 Hb_002492_010--Hb_004143_100 Hb_000402_230 Hb_000402_230 Hb_004143_100--Hb_000402_230 Hb_003866_080 Hb_003866_080 Hb_004143_100--Hb_003866_080 Hb_004128_130 Hb_004128_130 Hb_004143_100--Hb_004128_130 Hb_004143_100--Hb_001089_050 Hb_003120_080 Hb_003120_080 Hb_004143_100--Hb_003120_080 Hb_001473_160--Hb_000072_120 Hb_000329_230 Hb_000329_230 Hb_001473_160--Hb_000329_230 Hb_000637_110 Hb_000637_110 Hb_001473_160--Hb_000637_110 Hb_002028_210 Hb_002028_210 Hb_001473_160--Hb_002028_210 Hb_093458_040 Hb_093458_040 Hb_001473_160--Hb_093458_040 Hb_000072_120--Hb_000329_230 Hb_001674_030 Hb_001674_030 Hb_000072_120--Hb_001674_030 Hb_000072_120--Hb_004030_080 Hb_001679_050 Hb_001679_050 Hb_000072_120--Hb_001679_050 Hb_005918_010 Hb_005918_010 Hb_003544_060--Hb_005918_010 Hb_002456_010 Hb_002456_010 Hb_003544_060--Hb_002456_010 Hb_002234_090 Hb_002234_090 Hb_003544_060--Hb_002234_090 Hb_000836_460 Hb_000836_460 Hb_003544_060--Hb_000836_460 Hb_011618_090 Hb_011618_090 Hb_003544_060--Hb_011618_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.925 39.2676 22.4827 34.9299 17.3445 23.753
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.0792 24.9051 26.0714 28.5204 23.3594

CAGE analysis