Hb_003910_060

Information

Type -
Description -
Location Contig3910: 45140-47221
Sequence    

Annotation

kegg
ID pop:POPTR_0017s12720g
description POPTRDRAFT_808965; hypothetical protein
nr
ID XP_012079169.1
description PREDICTED: pentatricopeptide repeat-containing protein At4g37170 [Jatropha curcas]
swissprot
ID O23169
description Pentatricopeptide repeat-containing protein At4g37170 OS=Arabidopsis thaliana GN=PCMP-H5 PE=3 SV=1
trembl
ID B9IK55
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s12720g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39178: 46031-46393 , PASA_asmbl_39179: 47022-47239
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003910_060 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At4g37170 [Jatropha curcas]
2 Hb_001862_180 0.0779990534 - - PREDICTED: pentatricopeptide repeat-containing protein ELI1, chloroplastic [Jatropha curcas]
3 Hb_000366_040 0.0907736362 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
4 Hb_002316_160 0.0974999221 transcription factor TF Family: IWS1 PREDICTED: uncharacterized protein LOC105640422 [Jatropha curcas]
5 Hb_000388_090 0.0986487316 - - PREDICTED: pentatricopeptide repeat-containing protein At1g77360, mitochondrial-like [Jatropha curcas]
6 Hb_002055_040 0.1037303784 - - PREDICTED: large subunit GTPase 1 homolog [Jatropha curcas]
7 Hb_002063_020 0.1060449705 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17140 [Jatropha curcas]
8 Hb_001865_070 0.1062642515 - - PREDICTED: uncharacterized protein LOC105647937 isoform X1 [Jatropha curcas]
9 Hb_000130_490 0.1066025765 - - PREDICTED: uncharacterized protein LOC105637408 isoform X2 [Jatropha curcas]
10 Hb_000365_240 0.1078221901 - - PREDICTED: mediator of RNA polymerase II transcription subunit 33A-like [Jatropha curcas]
11 Hb_003607_070 0.1083857311 - - PREDICTED: pentatricopeptide repeat-containing protein At5g48910 [Jatropha curcas]
12 Hb_000204_120 0.1087477536 - - PREDICTED: uncharacterized protein LOC105639239 [Jatropha curcas]
13 Hb_004374_110 0.1108885045 - - PREDICTED: uncharacterized protein LOC105645768 [Jatropha curcas]
14 Hb_002099_080 0.1111414075 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 37-like [Jatropha curcas]
15 Hb_001157_240 0.1118213953 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 37-like [Jatropha curcas]
16 Hb_002235_040 0.112500599 - - PREDICTED: pentatricopeptide repeat-containing protein At3g29230 [Jatropha curcas]
17 Hb_005736_020 0.1126046817 - - hypothetical protein POPTR_0005s20940g [Populus trichocarpa]
18 Hb_000672_040 0.1129738289 - - PREDICTED: ENHANCER OF AG-4 protein 2 [Jatropha curcas]
19 Hb_012098_070 0.1130864553 - - PREDICTED: uncharacterized protein LOC105633371 [Jatropha curcas]
20 Hb_000094_070 0.1131844971 - - PREDICTED: 5'-nucleotidase domain-containing protein 4 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_003910_060 Hb_003910_060 Hb_001862_180 Hb_001862_180 Hb_003910_060--Hb_001862_180 Hb_000366_040 Hb_000366_040 Hb_003910_060--Hb_000366_040 Hb_002316_160 Hb_002316_160 Hb_003910_060--Hb_002316_160 Hb_000388_090 Hb_000388_090 Hb_003910_060--Hb_000388_090 Hb_002055_040 Hb_002055_040 Hb_003910_060--Hb_002055_040 Hb_002063_020 Hb_002063_020 Hb_003910_060--Hb_002063_020 Hb_003203_030 Hb_003203_030 Hb_001862_180--Hb_003203_030 Hb_001205_230 Hb_001205_230 Hb_001862_180--Hb_001205_230 Hb_000803_260 Hb_000803_260 Hb_001862_180--Hb_000803_260 Hb_001862_180--Hb_000388_090 Hb_001329_140 Hb_001329_140 Hb_001862_180--Hb_001329_140 Hb_000366_040--Hb_002063_020 Hb_000352_190 Hb_000352_190 Hb_000366_040--Hb_000352_190 Hb_000366_040--Hb_000388_090 Hb_004712_130 Hb_004712_130 Hb_000366_040--Hb_004712_130 Hb_002099_080 Hb_002099_080 Hb_000366_040--Hb_002099_080 Hb_005736_020 Hb_005736_020 Hb_000366_040--Hb_005736_020 Hb_000130_490 Hb_000130_490 Hb_002316_160--Hb_000130_490 Hb_005486_030 Hb_005486_030 Hb_002316_160--Hb_005486_030 Hb_001999_090 Hb_001999_090 Hb_002316_160--Hb_001999_090 Hb_009898_010 Hb_009898_010 Hb_002316_160--Hb_009898_010 Hb_006718_020 Hb_006718_020 Hb_002316_160--Hb_006718_020 Hb_001865_070 Hb_001865_070 Hb_002316_160--Hb_001865_070 Hb_001357_020 Hb_001357_020 Hb_000388_090--Hb_001357_020 Hb_000388_090--Hb_005736_020 Hb_000388_090--Hb_002063_020 Hb_028912_050 Hb_028912_050 Hb_000388_090--Hb_028912_050 Hb_000388_090--Hb_002099_080 Hb_000028_390 Hb_000028_390 Hb_000388_090--Hb_000028_390 Hb_002055_040--Hb_002099_080 Hb_000365_240 Hb_000365_240 Hb_002055_040--Hb_000365_240 Hb_011228_010 Hb_011228_010 Hb_002055_040--Hb_011228_010 Hb_000039_150 Hb_000039_150 Hb_002055_040--Hb_000039_150 Hb_007820_010 Hb_007820_010 Hb_002055_040--Hb_007820_010 Hb_002055_040--Hb_000388_090 Hb_003253_040 Hb_003253_040 Hb_002063_020--Hb_003253_040 Hb_002063_020--Hb_002099_080 Hb_002942_100 Hb_002942_100 Hb_002063_020--Hb_002942_100 Hb_002063_020--Hb_000352_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.27827 1.36042 0.613109 0.774071 0.639306 1.15495
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.431731 0.696393 1.61217 1.4388 2.19218

CAGE analysis