Hb_003911_040

Information

Type -
Description -
Location Contig3911: 69747-71665
Sequence    

Annotation

kegg
ID pop:POPTR_0019s05040g
description Gar1 RNA-binding region family protein
nr
ID XP_012070456.1
description PREDICTED: putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Jatropha curcas]
swissprot
ID Q8VZT0
description Putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 OS=Arabidopsis thaliana GN=At3g03920 PE=2 SV=1
trembl
ID A0A067L6M8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02724 PE=4 SV=1
Gene Ontology
ID GO:0031429
description h aca ribonucleoprotein complex subunit 1-like protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39183: 69839-71727
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003911_040 0.0 - - PREDICTED: putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Jatropha curcas]
2 Hb_007632_250 0.0737242578 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000035_380 0.0839048996 - - -
4 Hb_000997_060 0.0854962452 - - PREDICTED: DNA repair protein XRCC4 [Jatropha curcas]
5 Hb_017895_050 0.0869479571 - - PREDICTED: LOW QUALITY PROTEIN: UPF0160 protein MYG1, mitochondrial [Jatropha curcas]
6 Hb_006637_060 0.0927848374 - - PREDICTED: uncharacterized protein LOC105649300 [Jatropha curcas]
7 Hb_119583_010 0.0963385729 - - 60S ribosomal protein L12A [Hevea brasiliensis]
8 Hb_003106_130 0.0973510159 - - PREDICTED: uncharacterized protein LOC105640436 [Jatropha curcas]
9 Hb_001369_060 0.0994106668 - - PREDICTED: uncharacterized Rho GTPase-activating protein At5g61530 [Jatropha curcas]
10 Hb_000317_430 0.0995587915 transcription factor TF Family: SET PREDICTED: ribosomal lysine N-methyltransferase 3 [Jatropha curcas]
11 Hb_000365_360 0.1008068345 - - PREDICTED: RING finger and transmembrane domain-containing protein 2 isoform X1 [Jatropha curcas]
12 Hb_027892_060 0.1018441055 - - PREDICTED: inter-alpha-trypsin inhibitor heavy chain H3 isoform X1 [Jatropha curcas]
13 Hb_004502_030 0.1024255556 - - unknown [Populus trichocarpa]
14 Hb_098709_010 0.102478722 - - PREDICTED: protein argonaute 1 [Jatropha curcas]
15 Hb_033642_020 0.1045547695 - - hypothetical protein JCGZ_19094 [Jatropha curcas]
16 Hb_134226_010 0.104822661 - - 40S ribosomal protein S21e, putative [Ricinus communis]
17 Hb_001804_060 0.1053362291 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_18059 [Jatropha curcas]
18 Hb_003453_010 0.1079559576 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000258_410 0.1084477839 - - PREDICTED: uncharacterized protein LOC105630409 [Jatropha curcas]
20 Hb_000847_070 0.108573793 - - PREDICTED: uncharacterized protein LOC105125699 [Populus euphratica]

Gene co-expression network

sample Hb_003911_040 Hb_003911_040 Hb_007632_250 Hb_007632_250 Hb_003911_040--Hb_007632_250 Hb_000035_380 Hb_000035_380 Hb_003911_040--Hb_000035_380 Hb_000997_060 Hb_000997_060 Hb_003911_040--Hb_000997_060 Hb_017895_050 Hb_017895_050 Hb_003911_040--Hb_017895_050 Hb_006637_060 Hb_006637_060 Hb_003911_040--Hb_006637_060 Hb_119583_010 Hb_119583_010 Hb_003911_040--Hb_119583_010 Hb_000617_320 Hb_000617_320 Hb_007632_250--Hb_000617_320 Hb_007632_250--Hb_119583_010 Hb_004502_030 Hb_004502_030 Hb_007632_250--Hb_004502_030 Hb_027892_060 Hb_027892_060 Hb_007632_250--Hb_027892_060 Hb_007632_250--Hb_017895_050 Hb_000317_430 Hb_000317_430 Hb_000035_380--Hb_000317_430 Hb_060809_010 Hb_060809_010 Hb_000035_380--Hb_060809_010 Hb_001221_230 Hb_001221_230 Hb_000035_380--Hb_001221_230 Hb_000365_360 Hb_000365_360 Hb_000035_380--Hb_000365_360 Hb_118419_020 Hb_118419_020 Hb_000035_380--Hb_118419_020 Hb_001214_130 Hb_001214_130 Hb_000035_380--Hb_001214_130 Hb_000258_410 Hb_000258_410 Hb_000997_060--Hb_000258_410 Hb_002232_170 Hb_002232_170 Hb_000997_060--Hb_002232_170 Hb_008406_160 Hb_008406_160 Hb_000997_060--Hb_008406_160 Hb_015941_030 Hb_015941_030 Hb_000997_060--Hb_015941_030 Hb_123475_010 Hb_123475_010 Hb_000997_060--Hb_123475_010 Hb_000272_100 Hb_000272_100 Hb_000997_060--Hb_000272_100 Hb_017895_050--Hb_027892_060 Hb_003453_010 Hb_003453_010 Hb_017895_050--Hb_003453_010 Hb_001437_040 Hb_001437_040 Hb_017895_050--Hb_001437_040 Hb_004204_030 Hb_004204_030 Hb_017895_050--Hb_004204_030 Hb_098709_010 Hb_098709_010 Hb_017895_050--Hb_098709_010 Hb_000847_070 Hb_000847_070 Hb_006637_060--Hb_000847_070 Hb_003638_140 Hb_003638_140 Hb_006637_060--Hb_003638_140 Hb_000176_110 Hb_000176_110 Hb_006637_060--Hb_000176_110 Hb_000003_090 Hb_000003_090 Hb_006637_060--Hb_000003_090 Hb_006637_060--Hb_004502_030 Hb_002681_140 Hb_002681_140 Hb_006637_060--Hb_002681_140 Hb_003633_130 Hb_003633_130 Hb_119583_010--Hb_003633_130 Hb_003106_130 Hb_003106_130 Hb_119583_010--Hb_003106_130 Hb_119583_010--Hb_004502_030 Hb_119583_010--Hb_000847_070 Hb_002997_170 Hb_002997_170 Hb_119583_010--Hb_002997_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
92.347 23.0897 10.579 10.1261 106.418 163.683
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
106.079 84.491 39.2949 35.541 12.6091

CAGE analysis