Hb_003912_030

Information

Type -
Description -
Location Contig3912: 86878-92212
Sequence    

Annotation

kegg
ID pop:POPTR_0006s25460g
description POPTRDRAFT_561747; hypothetical protein
nr
ID XP_012077364.1
description PREDICTED: uncharacterized protein LOC105638204 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KQR6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07725 PE=4 SV=1
Gene Ontology
ID GO:0003746
description elongation factor ts

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39184: 88019-91235 , PASA_asmbl_39185: 91839-92000
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003912_030 0.0 - - PREDICTED: uncharacterized protein LOC105638204 [Jatropha curcas]
2 Hb_000853_210 0.0854508767 - - PREDICTED: uncharacterized protein LOC105642575 isoform X1 [Jatropha curcas]
3 Hb_004680_120 0.0861716269 - - PREDICTED: UDP-glucuronic acid decarboxylase 1 [Jatropha curcas]
4 Hb_000086_440 0.1041944877 - - PREDICTED: protein BREAST CANCER SUSCEPTIBILITY 1 homolog [Jatropha curcas]
5 Hb_000667_030 0.1074628949 - - PREDICTED: protein transport protein SEC23-like [Jatropha curcas]
6 Hb_004117_100 0.1078866939 - - Vacuolar sorting receptor 1 precursor, putative [Ricinus communis]
7 Hb_034432_030 0.1089728122 - - PREDICTED: probable glycosyltransferase At5g20260 isoform X1 [Jatropha curcas]
8 Hb_004410_050 0.110567884 - - PREDICTED: uncharacterized TPR repeat-containing protein At1g05150-like [Jatropha curcas]
9 Hb_001109_060 0.112021708 - - amino acid transporter, putative [Ricinus communis]
10 Hb_000264_350 0.1125708137 - - PREDICTED: uncharacterized protein LOC105649541 [Jatropha curcas]
11 Hb_001498_010 0.113603627 - - PREDICTED: uncharacterized protein LOC105648994 [Jatropha curcas]
12 Hb_000037_190 0.1138228064 - - PREDICTED: uncharacterized protein LOC105641500 [Jatropha curcas]
13 Hb_010294_010 0.1145333194 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B [Jatropha curcas]
14 Hb_000796_040 0.1146600985 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_162275_040 0.1159401192 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003206_090 0.1160928097 - - PREDICTED: protein trichome birefringence-like 5 [Jatropha curcas]
17 Hb_001279_030 0.1162085514 - - PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like [Jatropha curcas]
18 Hb_146224_010 0.1174127043 - - conserved hypothetical protein [Ricinus communis]
19 Hb_006501_090 0.1179671885 - - PREDICTED: golgin candidate 1 [Jatropha curcas]
20 Hb_000213_010 0.1179770404 - - PREDICTED: villin-3-like isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_003912_030 Hb_003912_030 Hb_000853_210 Hb_000853_210 Hb_003912_030--Hb_000853_210 Hb_004680_120 Hb_004680_120 Hb_003912_030--Hb_004680_120 Hb_000086_440 Hb_000086_440 Hb_003912_030--Hb_000086_440 Hb_000667_030 Hb_000667_030 Hb_003912_030--Hb_000667_030 Hb_004117_100 Hb_004117_100 Hb_003912_030--Hb_004117_100 Hb_034432_030 Hb_034432_030 Hb_003912_030--Hb_034432_030 Hb_000796_040 Hb_000796_040 Hb_000853_210--Hb_000796_040 Hb_000009_600 Hb_000009_600 Hb_000853_210--Hb_000009_600 Hb_000853_210--Hb_034432_030 Hb_004228_010 Hb_004228_010 Hb_000853_210--Hb_004228_010 Hb_007904_030 Hb_007904_030 Hb_000853_210--Hb_007904_030 Hb_004306_080 Hb_004306_080 Hb_000853_210--Hb_004306_080 Hb_001498_010 Hb_001498_010 Hb_004680_120--Hb_001498_010 Hb_011228_010 Hb_011228_010 Hb_004680_120--Hb_011228_010 Hb_001279_030 Hb_001279_030 Hb_004680_120--Hb_001279_030 Hb_001005_050 Hb_001005_050 Hb_004680_120--Hb_001005_050 Hb_003544_140 Hb_003544_140 Hb_004680_120--Hb_003544_140 Hb_001109_060 Hb_001109_060 Hb_000086_440--Hb_001109_060 Hb_005227_010 Hb_005227_010 Hb_000086_440--Hb_005227_010 Hb_162275_040 Hb_162275_040 Hb_000086_440--Hb_162275_040 Hb_000035_170 Hb_000035_170 Hb_000086_440--Hb_000035_170 Hb_132840_110 Hb_132840_110 Hb_000086_440--Hb_132840_110 Hb_006501_090 Hb_006501_090 Hb_000086_440--Hb_006501_090 Hb_010294_010 Hb_010294_010 Hb_000667_030--Hb_010294_010 Hb_005215_010 Hb_005215_010 Hb_000667_030--Hb_005215_010 Hb_012518_070 Hb_012518_070 Hb_000667_030--Hb_012518_070 Hb_021297_050 Hb_021297_050 Hb_000667_030--Hb_021297_050 Hb_000494_050 Hb_000494_050 Hb_000667_030--Hb_000494_050 Hb_000317_100 Hb_000317_100 Hb_000667_030--Hb_000317_100 Hb_000313_260 Hb_000313_260 Hb_004117_100--Hb_000313_260 Hb_000463_140 Hb_000463_140 Hb_004117_100--Hb_000463_140 Hb_004117_100--Hb_034432_030 Hb_004117_100--Hb_000853_210 Hb_005488_150 Hb_005488_150 Hb_004117_100--Hb_005488_150 Hb_048476_170 Hb_048476_170 Hb_004117_100--Hb_048476_170 Hb_001379_110 Hb_001379_110 Hb_034432_030--Hb_001379_110 Hb_001047_220 Hb_001047_220 Hb_034432_030--Hb_001047_220 Hb_000544_010 Hb_000544_010 Hb_034432_030--Hb_000544_010 Hb_011618_080 Hb_011618_080 Hb_034432_030--Hb_011618_080 Hb_000975_040 Hb_000975_040 Hb_034432_030--Hb_000975_040 Hb_012053_080 Hb_012053_080 Hb_034432_030--Hb_012053_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.83451 3.197 2.82904 4.71703 6.28777 3.70352
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.88595 1.19951 4.75289 2.51032 5.10648

CAGE analysis