Hb_003912_040

Information

Type -
Description -
Location Contig3912: 94438-99544
Sequence    

Annotation

kegg
ID rcu:RCOM_2158230
description hypothetical protein
nr
ID KDO79832.1
description hypothetical protein CISIN_1g005153mg [Citrus sinensis]
swissprot
ID Q8R480
description Nuclear pore complex protein Nup85 OS=Mus musculus GN=Nup85 PE=1 SV=1
trembl
ID A0A067GWL5
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g005153mg PE=4 SV=1
Gene Ontology
ID GO:0005635
description nuclear pore complex protein nup85

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39186: 94441-114156
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003912_040 0.0 - - hypothetical protein CISIN_1g005153mg [Citrus sinensis]
2 Hb_000069_130 0.0589202218 - - PREDICTED: uncharacterized protein LOC105642829 isoform X1 [Jatropha curcas]
3 Hb_000046_570 0.0605620312 - - hypothetical protein JCGZ_01998 [Jatropha curcas]
4 Hb_002492_010 0.0625551137 - - PREDICTED: inositol-tetrakisphosphate 1-kinase 2-like [Populus euphratica]
5 Hb_007062_040 0.0631917949 - - ADP-ribosylation factor GTPase-activating protein AGD2 [Morus notabilis]
6 Hb_008226_090 0.0682332864 - - PREDICTED: reticulon-like protein B16 isoform X1 [Jatropha curcas]
7 Hb_000120_910 0.068976643 - - plant ubiquilin, putative [Ricinus communis]
8 Hb_000069_480 0.071385694 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000205_130 0.0717552568 - - calcium ion binding protein, putative [Ricinus communis]
10 Hb_001856_180 0.0722556377 - - PREDICTED: eukaryotic translation initiation factor 3 subunit M [Jatropha curcas]
11 Hb_004143_100 0.07236651 - - conserved hypothetical protein [Ricinus communis]
12 Hb_007248_030 0.0734920808 - - PREDICTED: uncharacterized protein LOC105633558 [Jatropha curcas]
13 Hb_004586_060 0.0735480549 - - PREDICTED: AP-4 complex subunit mu [Jatropha curcas]
14 Hb_001089_050 0.0739284745 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 4 [Jatropha curcas]
15 Hb_002413_010 0.0747582746 - - ABC transporter family protein [Hevea brasiliensis]
16 Hb_008568_020 0.0748294493 - - PREDICTED: uncharacterized protein LOC105122325 isoform X3 [Populus euphratica]
17 Hb_031641_010 0.0754083826 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001584_350 0.0754433639 - - hypothetical protein JCGZ_23178 [Jatropha curcas]
19 Hb_000087_060 0.0755936663 - - protein transporter, putative [Ricinus communis]
20 Hb_001481_060 0.0757191893 - - PREDICTED: E3 ubiquitin-protein ligase HOS1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003912_040 Hb_003912_040 Hb_000069_130 Hb_000069_130 Hb_003912_040--Hb_000069_130 Hb_000046_570 Hb_000046_570 Hb_003912_040--Hb_000046_570 Hb_002492_010 Hb_002492_010 Hb_003912_040--Hb_002492_010 Hb_007062_040 Hb_007062_040 Hb_003912_040--Hb_007062_040 Hb_008226_090 Hb_008226_090 Hb_003912_040--Hb_008226_090 Hb_000120_910 Hb_000120_910 Hb_003912_040--Hb_000120_910 Hb_000402_230 Hb_000402_230 Hb_000069_130--Hb_000402_230 Hb_000809_160 Hb_000809_160 Hb_000069_130--Hb_000809_160 Hb_001089_050 Hb_001089_050 Hb_000069_130--Hb_001089_050 Hb_002374_290 Hb_002374_290 Hb_000069_130--Hb_002374_290 Hb_002542_130 Hb_002542_130 Hb_000069_130--Hb_002542_130 Hb_000046_570--Hb_007062_040 Hb_004586_060 Hb_004586_060 Hb_000046_570--Hb_004586_060 Hb_007248_030 Hb_007248_030 Hb_000046_570--Hb_007248_030 Hb_000390_250 Hb_000390_250 Hb_000046_570--Hb_000390_250 Hb_001405_210 Hb_001405_210 Hb_000046_570--Hb_001405_210 Hb_001716_020 Hb_001716_020 Hb_002492_010--Hb_001716_020 Hb_001481_060 Hb_001481_060 Hb_002492_010--Hb_001481_060 Hb_000087_060 Hb_000087_060 Hb_002492_010--Hb_000087_060 Hb_004994_240 Hb_004994_240 Hb_002492_010--Hb_004994_240 Hb_002492_010--Hb_001089_050 Hb_004143_100 Hb_004143_100 Hb_002492_010--Hb_004143_100 Hb_032990_010 Hb_032990_010 Hb_007062_040--Hb_032990_010 Hb_007062_040--Hb_004586_060 Hb_001856_180 Hb_001856_180 Hb_007062_040--Hb_001856_180 Hb_007062_040--Hb_001405_210 Hb_005460_050 Hb_005460_050 Hb_007062_040--Hb_005460_050 Hb_005723_020 Hb_005723_020 Hb_008226_090--Hb_005723_020 Hb_002014_040 Hb_002014_040 Hb_008226_090--Hb_002014_040 Hb_008568_020 Hb_008568_020 Hb_008226_090--Hb_008568_020 Hb_001135_120 Hb_001135_120 Hb_008226_090--Hb_001135_120 Hb_103747_020 Hb_103747_020 Hb_008226_090--Hb_103747_020 Hb_004517_020 Hb_004517_020 Hb_000120_910--Hb_004517_020 Hb_000977_300 Hb_000977_300 Hb_000120_910--Hb_000977_300 Hb_027654_020 Hb_027654_020 Hb_000120_910--Hb_027654_020 Hb_000949_020 Hb_000949_020 Hb_000120_910--Hb_000949_020 Hb_000120_910--Hb_000809_160 Hb_001723_010 Hb_001723_010 Hb_000120_910--Hb_001723_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.92954 7.55024 6.20071 6.17492 3.94857 5.38307
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.62069 3.06425 2.67419 4.22815 4.24315

CAGE analysis