Hb_003912_070

Information

Type -
Description -
Location Contig3912: 110681-114131
Sequence    

Annotation

kegg
ID rcu:RCOM_0799860
description hypothetical protein
nr
ID XP_012077365.1
description PREDICTED: nuclear pore complex protein NUP85 [Jatropha curcas]
swissprot
ID Q8RXH2
description Nuclear pore complex protein NUP85 OS=Arabidopsis thaliana GN=NUP85 PE=1 SV=1
trembl
ID A0A067KPE9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07726 PE=4 SV=1
Gene Ontology
ID GO:0005635
description nuclear pore complex protein nup85

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39186: 94441-114156
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003912_070 0.0 - - PREDICTED: nuclear pore complex protein NUP85 [Jatropha curcas]
2 Hb_012092_060 0.0492220241 - - PREDICTED: KH domain-containing protein At4g18375 [Jatropha curcas]
3 Hb_005568_040 0.0564260511 - - PREDICTED: uncharacterized protein LOC105628163 isoform X2 [Jatropha curcas]
4 Hb_011287_050 0.0574799049 - - PREDICTED: uncharacterized protein LOC105644786 [Jatropha curcas]
5 Hb_000331_580 0.0607407476 - - PREDICTED: programmed cell death protein 4-like [Jatropha curcas]
6 Hb_043362_010 0.0720006645 - - hypothetical protein JCGZ_23765 [Jatropha curcas]
7 Hb_000479_240 0.0729191267 - - PREDICTED: probable ubiquitin conjugation factor E4 isoform X2 [Jatropha curcas]
8 Hb_000008_240 0.0731325766 - - conserved hypothetical protein [Ricinus communis]
9 Hb_011849_040 0.0732614323 - - ubiquitin-protein ligase, putative [Ricinus communis]
10 Hb_000003_100 0.0778038378 transcription factor TF Family: SNF2 PREDICTED: transcription termination factor 2 isoform X5 [Jatropha curcas]
11 Hb_004645_070 0.0781006641 - - PREDICTED: beta-1,3-galactosyltransferase 15 [Jatropha curcas]
12 Hb_002284_250 0.0785544438 - - PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]
13 Hb_012286_040 0.0795053926 - - PREDICTED: pre-mRNA-splicing factor RSE1 [Jatropha curcas]
14 Hb_000537_050 0.0804430525 - - AP-2 complex subunit beta-1, putative [Ricinus communis]
15 Hb_002960_080 0.0807300627 transcription factor TF Family: IWS1 PREDICTED: uncharacterized protein LOC105635322 [Jatropha curcas]
16 Hb_004109_370 0.0815562353 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
17 Hb_061878_010 0.0817493562 - - hypothetical protein CISIN_1g0094072mg, partial [Citrus sinensis]
18 Hb_003943_010 0.0823697323 - - conserved hypothetical protein [Ricinus communis]
19 Hb_041327_010 0.0826533258 - - PREDICTED: la-related protein 1A isoform X1 [Jatropha curcas]
20 Hb_004586_290 0.082973692 - - PREDICTED: transport inhibitor response 1-like protein [Jatropha curcas]

Gene co-expression network

sample Hb_003912_070 Hb_003912_070 Hb_012092_060 Hb_012092_060 Hb_003912_070--Hb_012092_060 Hb_005568_040 Hb_005568_040 Hb_003912_070--Hb_005568_040 Hb_011287_050 Hb_011287_050 Hb_003912_070--Hb_011287_050 Hb_000331_580 Hb_000331_580 Hb_003912_070--Hb_000331_580 Hb_043362_010 Hb_043362_010 Hb_003912_070--Hb_043362_010 Hb_000479_240 Hb_000479_240 Hb_003912_070--Hb_000479_240 Hb_000537_050 Hb_000537_050 Hb_012092_060--Hb_000537_050 Hb_012092_060--Hb_005568_040 Hb_012286_040 Hb_012286_040 Hb_012092_060--Hb_012286_040 Hb_000003_100 Hb_000003_100 Hb_012092_060--Hb_000003_100 Hb_012092_060--Hb_011287_050 Hb_005568_040--Hb_000479_240 Hb_004645_070 Hb_004645_070 Hb_005568_040--Hb_004645_070 Hb_005568_040--Hb_000331_580 Hb_000008_240 Hb_000008_240 Hb_005568_040--Hb_000008_240 Hb_004586_290 Hb_004586_290 Hb_005568_040--Hb_004586_290 Hb_001105_160 Hb_001105_160 Hb_011287_050--Hb_001105_160 Hb_011287_050--Hb_005568_040 Hb_061878_010 Hb_061878_010 Hb_011287_050--Hb_061878_010 Hb_000487_380 Hb_000487_380 Hb_011287_050--Hb_000487_380 Hb_000331_580--Hb_000008_240 Hb_000331_580--Hb_000003_100 Hb_002007_110 Hb_002007_110 Hb_000331_580--Hb_002007_110 Hb_123531_010 Hb_123531_010 Hb_000331_580--Hb_123531_010 Hb_006531_020 Hb_006531_020 Hb_000331_580--Hb_006531_020 Hb_002960_080 Hb_002960_080 Hb_043362_010--Hb_002960_080 Hb_001188_020 Hb_001188_020 Hb_043362_010--Hb_001188_020 Hb_043362_010--Hb_002007_110 Hb_003581_170 Hb_003581_170 Hb_043362_010--Hb_003581_170 Hb_003805_040 Hb_003805_040 Hb_043362_010--Hb_003805_040 Hb_001904_030 Hb_001904_030 Hb_000479_240--Hb_001904_030 Hb_009252_050 Hb_009252_050 Hb_000479_240--Hb_009252_050 Hb_000479_240--Hb_000008_240 Hb_000479_240--Hb_004645_070 Hb_003604_050 Hb_003604_050 Hb_000479_240--Hb_003604_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.54901 8.8958 4.95184 6.7776 4.67519 7.16561
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.27669 2.07812 3.90346 7.80192 5.53654

CAGE analysis