Hb_003912_090

Information

Type -
Description -
Location Contig3912: 125472-129097
Sequence    

Annotation

kegg
ID rcu:RCOM_0799890
description peptidyl-tRNA hydrolase, putative (EC:3.1.1.29)
nr
ID XP_002516509.1
description peptidyl-tRNA hydrolase, putative [Ricinus communis]
swissprot
ID Q9Y3E5
description Peptidyl-tRNA hydrolase 2, mitochondrial OS=Homo sapiens GN=PTRH2 PE=1 SV=1
trembl
ID B9RRZ0
description Peptidyl-tRNA hydrolase, putative OS=Ricinus communis GN=RCOM_0799890 PE=4 SV=1
Gene Ontology
ID GO:0004045
description peptidyl-trna hydrolase mitochondrial isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39189: 125929-126925 , PASA_asmbl_39190: 127135-128837
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003912_090 0.0 - - peptidyl-tRNA hydrolase, putative [Ricinus communis]
2 Hb_005862_010 0.0881200229 - - PREDICTED: riboflavin biosynthesis protein PYRD, chloroplastic [Jatropha curcas]
3 Hb_028420_020 0.0954537205 - - PREDICTED: uncharacterized protein LOC105647566 [Jatropha curcas]
4 Hb_144598_030 0.0977102858 - - PREDICTED: mitotic apparatus protein p62 [Jatropha curcas]
5 Hb_005016_050 0.0985877818 - - -
6 Hb_020665_040 0.1019501234 transcription factor TF Family: Jumonji PREDICTED: trichohyalin-like [Malus domestica]
7 Hb_002374_020 0.1072023937 - - PREDICTED: protein KRTCAP2 homolog [Jatropha curcas]
8 Hb_009117_030 0.1072517001 - - PREDICTED: histidine protein methyltransferase 1 homolog isoform X2 [Jatropha curcas]
9 Hb_000014_150 0.1081476843 - - PREDICTED: cysteine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
10 Hb_000193_270 0.110176522 transcription factor TF Family: Pseudo ARR-B PREDICTED: two-component response regulator-like APRR1 isoform X1 [Jatropha curcas]
11 Hb_004072_020 0.1113337842 - - PREDICTED: uncharacterized protein LOC105635274 [Jatropha curcas]
12 Hb_029921_040 0.1116289072 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004934_070 0.1128834502 - - PREDICTED: U2 small nuclear ribonucleoprotein A' [Jatropha curcas]
14 Hb_003333_060 0.1153934511 - - PREDICTED: uncharacterized protein LOC105628461 [Jatropha curcas]
15 Hb_137403_010 0.1175257597 - - PREDICTED: actin-related protein 9 [Jatropha curcas]
16 Hb_114343_010 0.1191597274 - - PREDICTED: uncharacterized protein LOC105647831 [Jatropha curcas]
17 Hb_150360_010 0.1194740905 - - hypothetical protein JCGZ_16890 [Jatropha curcas]
18 Hb_008406_190 0.1196767821 - - PREDICTED: RNA polymerase II subunit 5-mediating protein homolog isoform X2 [Jatropha curcas]
19 Hb_010381_120 0.1220459528 - - PREDICTED: inactive protein kinase SELMODRAFT_444075 [Jatropha curcas]
20 Hb_000373_240 0.1227098042 - - PREDICTED: uncharacterized protein LOC105640940 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003912_090 Hb_003912_090 Hb_005862_010 Hb_005862_010 Hb_003912_090--Hb_005862_010 Hb_028420_020 Hb_028420_020 Hb_003912_090--Hb_028420_020 Hb_144598_030 Hb_144598_030 Hb_003912_090--Hb_144598_030 Hb_005016_050 Hb_005016_050 Hb_003912_090--Hb_005016_050 Hb_020665_040 Hb_020665_040 Hb_003912_090--Hb_020665_040 Hb_002374_020 Hb_002374_020 Hb_003912_090--Hb_002374_020 Hb_004934_070 Hb_004934_070 Hb_005862_010--Hb_004934_070 Hb_000494_040 Hb_000494_040 Hb_005862_010--Hb_000494_040 Hb_005862_010--Hb_144598_030 Hb_004072_020 Hb_004072_020 Hb_005862_010--Hb_004072_020 Hb_137403_010 Hb_137403_010 Hb_005862_010--Hb_137403_010 Hb_021238_050 Hb_021238_050 Hb_028420_020--Hb_021238_050 Hb_028420_020--Hb_005862_010 Hb_028420_020--Hb_020665_040 Hb_028420_020--Hb_005016_050 Hb_003038_210 Hb_003038_210 Hb_028420_020--Hb_003038_210 Hb_144598_030--Hb_020665_040 Hb_007594_130 Hb_007594_130 Hb_144598_030--Hb_007594_130 Hb_002671_100 Hb_002671_100 Hb_144598_030--Hb_002671_100 Hb_004117_130 Hb_004117_130 Hb_144598_030--Hb_004117_130 Hb_004881_020 Hb_004881_020 Hb_144598_030--Hb_004881_020 Hb_002716_130 Hb_002716_130 Hb_144598_030--Hb_002716_130 Hb_009117_030 Hb_009117_030 Hb_005016_050--Hb_009117_030 Hb_023732_090 Hb_023732_090 Hb_005016_050--Hb_023732_090 Hb_027472_150 Hb_027472_150 Hb_005016_050--Hb_027472_150 Hb_003333_060 Hb_003333_060 Hb_005016_050--Hb_003333_060 Hb_000193_270 Hb_000193_270 Hb_005016_050--Hb_000193_270 Hb_002271_020 Hb_002271_020 Hb_020665_040--Hb_002271_020 Hb_020665_040--Hb_002716_130 Hb_005731_120 Hb_005731_120 Hb_020665_040--Hb_005731_120 Hb_000318_290 Hb_000318_290 Hb_020665_040--Hb_000318_290 Hb_033594_120 Hb_033594_120 Hb_020665_040--Hb_033594_120 Hb_002374_020--Hb_002671_100 Hb_002374_020--Hb_004934_070 Hb_002374_020--Hb_144598_030 Hb_001935_130 Hb_001935_130 Hb_002374_020--Hb_001935_130 Hb_005016_170 Hb_005016_170 Hb_002374_020--Hb_005016_170 Hb_002374_020--Hb_005862_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.77272 1.54881 2.42739 3.89929 5.57853 11.1755
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.8488 5.07207 2.31752 3.58832 3.46143

CAGE analysis