Hb_003913_010

Information

Type -
Description -
Location Contig3913: 859-1188
Sequence    

Annotation

kegg
ID rcu:RCOM_1508690
description hypothetical protein
nr
ID XP_002511321.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RAU6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1508690 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003913_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_012002_010 0.1527333347 - - hypothetical protein VITISV_016116 [Vitis vinifera]
3 Hb_003171_080 0.1761539565 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000061_290 0.1834038346 - - conserved hypothetical protein [Ricinus communis]
5 Hb_012633_060 0.1860042613 - - laccase, putative [Ricinus communis]
6 Hb_000805_060 0.1922323909 - - laccase, putative [Ricinus communis]
7 Hb_000270_340 0.1987277101 - - hypothetical protein JCGZ_11546 [Jatropha curcas]
8 Hb_003906_080 0.2044696738 - - Peroxidase 66 precursor, putative [Ricinus communis]
9 Hb_000563_520 0.206038254 - - multidrug resistance pump, putative [Ricinus communis]
10 Hb_002311_020 0.2061774149 - - PREDICTED: putative beta-D-xylosidase [Jatropha curcas]
11 Hb_001097_030 0.2082240144 - - nuclear transport factor, putative [Ricinus communis]
12 Hb_008705_080 0.2091842594 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14 [Jatropha curcas]
13 Hb_031527_010 0.2096001263 - - conserved hypothetical protein [Ricinus communis]
14 Hb_006351_090 0.210852634 - - UDP-glycosyltransferase 85A1 [Gossypium arboreum]
15 Hb_000580_200 0.2129069599 - - PREDICTED: pectinesterase 2 isoform X1 [Jatropha curcas]
16 Hb_001163_010 0.2144719078 - - PREDICTED: syncoilin [Jatropha curcas]
17 Hb_002170_030 0.2147708714 - - PREDICTED: laccase-4-like [Jatropha curcas]
18 Hb_151290_010 0.2148912709 - - unnamed protein product [Vitis vinifera]
19 Hb_135887_010 0.215440863 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1, partial [Populus euphratica]
20 Hb_005991_030 0.2174100105 - - copper ion binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_003913_010 Hb_003913_010 Hb_012002_010 Hb_012002_010 Hb_003913_010--Hb_012002_010 Hb_003171_080 Hb_003171_080 Hb_003913_010--Hb_003171_080 Hb_000061_290 Hb_000061_290 Hb_003913_010--Hb_000061_290 Hb_012633_060 Hb_012633_060 Hb_003913_010--Hb_012633_060 Hb_000805_060 Hb_000805_060 Hb_003913_010--Hb_000805_060 Hb_000270_340 Hb_000270_340 Hb_003913_010--Hb_000270_340 Hb_000664_100 Hb_000664_100 Hb_012002_010--Hb_000664_100 Hb_000563_520 Hb_000563_520 Hb_012002_010--Hb_000563_520 Hb_003906_080 Hb_003906_080 Hb_012002_010--Hb_003906_080 Hb_004393_040 Hb_004393_040 Hb_012002_010--Hb_004393_040 Hb_005991_030 Hb_005991_030 Hb_012002_010--Hb_005991_030 Hb_003171_080--Hb_003906_080 Hb_002311_020 Hb_002311_020 Hb_003171_080--Hb_002311_020 Hb_006351_090 Hb_006351_090 Hb_003171_080--Hb_006351_090 Hb_151290_010 Hb_151290_010 Hb_003171_080--Hb_151290_010 Hb_000580_200 Hb_000580_200 Hb_003171_080--Hb_000580_200 Hb_135887_010 Hb_135887_010 Hb_003171_080--Hb_135887_010 Hb_000417_220 Hb_000417_220 Hb_000061_290--Hb_000417_220 Hb_000061_290--Hb_012633_060 Hb_000690_170 Hb_000690_170 Hb_000061_290--Hb_000690_170 Hb_001276_050 Hb_001276_050 Hb_000061_290--Hb_001276_050 Hb_000061_290--Hb_000270_340 Hb_000200_360 Hb_000200_360 Hb_012633_060--Hb_000200_360 Hb_001959_100 Hb_001959_100 Hb_012633_060--Hb_001959_100 Hb_012633_060--Hb_000270_340 Hb_000227_100 Hb_000227_100 Hb_012633_060--Hb_000227_100 Hb_000340_240 Hb_000340_240 Hb_012633_060--Hb_000340_240 Hb_000538_110 Hb_000538_110 Hb_012633_060--Hb_000538_110 Hb_008705_080 Hb_008705_080 Hb_000805_060--Hb_008705_080 Hb_000805_060--Hb_002311_020 Hb_034507_030 Hb_034507_030 Hb_000805_060--Hb_034507_030 Hb_004994_230 Hb_004994_230 Hb_000805_060--Hb_004994_230 Hb_007281_010 Hb_007281_010 Hb_000805_060--Hb_007281_010 Hb_001014_180 Hb_001014_180 Hb_000805_060--Hb_001014_180 Hb_001097_030 Hb_001097_030 Hb_000270_340--Hb_001097_030 Hb_001163_010 Hb_001163_010 Hb_000270_340--Hb_001163_010 Hb_000427_020 Hb_000427_020 Hb_000270_340--Hb_000427_020 Hb_000270_340--Hb_000538_110 Hb_000076_240 Hb_000076_240 Hb_000270_340--Hb_000076_240 Hb_000122_230 Hb_000122_230 Hb_000270_340--Hb_000122_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.584885 0 0.331825 5.17429 0.254303 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.297835 0 0 0 7.9904

CAGE analysis