Hb_003913_020

Information

Type -
Description -
Location Contig3913: 2499-13382
Sequence    

Annotation

kegg
ID cam:101510390
description C2 and GRAM domain-containing protein At5g50170-like
nr
ID XP_012079983.1
description PREDICTED: C2 and GRAM domain-containing protein At5g50170 [Jatropha curcas]
swissprot
ID Q9FGS8
description C2 and GRAM domain-containing protein At5g50170 OS=Arabidopsis thaliana GN=At5g50170 PE=2 SV=1
trembl
ID A0A067K4H2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11408 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39192: 2679-3952 , PASA_asmbl_39193: 2639-4595 , PASA_asmbl_39194: 3991-4619 , PASA_asmbl_39195: 4341-4533 , PASA_asmbl_39196: 4626-5058
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003913_020 0.0 - - PREDICTED: C2 and GRAM domain-containing protein At5g50170 [Jatropha curcas]
2 Hb_002768_050 0.0717347962 - - Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis]
3 Hb_003626_070 0.0737739208 - - PREDICTED: golgin candidate 1 [Jatropha curcas]
4 Hb_033642_120 0.0798371537 - - PREDICTED: nucleolar GTP-binding protein 2 [Vitis vinifera]
5 Hb_002413_010 0.0807759428 - - ABC transporter family protein [Hevea brasiliensis]
6 Hb_000155_170 0.0824829305 transcription factor TF Family: VOZ hypothetical protein EUTSA_v10007498mg [Eutrema salsugineum]
7 Hb_000661_120 0.0827345905 - - cap binding protein, putative [Ricinus communis]
8 Hb_000110_350 0.0847047773 - - PREDICTED: ubiquitin receptor RAD23c-like isoform X2 [Gossypium raimondii]
9 Hb_000445_060 0.0859441084 - - PREDICTED: uncharacterized protein LOC105638996 isoform X3 [Jatropha curcas]
10 Hb_000868_120 0.0859694542 - - PREDICTED: suppressor of mec-8 and unc-52 protein homolog 2 [Jatropha curcas]
11 Hb_005305_100 0.0859917609 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
12 Hb_000954_010 0.0871937284 - - PREDICTED: uncharacterized protein LOC105646975 [Jatropha curcas]
13 Hb_001931_030 0.0881507877 - - PREDICTED: T-complex protein 1 subunit eta-like [Nelumbo nucifera]
14 Hb_002461_020 0.0889626848 - - PREDICTED: uncharacterized protein LOC105642649 isoform X2 [Jatropha curcas]
15 Hb_011972_020 0.0895449708 - - protein binding protein, putative [Ricinus communis]
16 Hb_000336_020 0.0905345817 - - PREDICTED: phospholipid-transporting ATPase 2 [Jatropha curcas]
17 Hb_001699_010 0.0908923716 - - drought-inducible protein [Manihot esculenta]
18 Hb_000179_190 0.0924306563 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 4 isoform X1 [Vitis vinifera]
19 Hb_001635_110 0.0925053957 - - PREDICTED: NADP-specific glutamate dehydrogenase [Jatropha curcas]
20 Hb_000529_060 0.0943285554 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 17 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003913_020 Hb_003913_020 Hb_002768_050 Hb_002768_050 Hb_003913_020--Hb_002768_050 Hb_003626_070 Hb_003626_070 Hb_003913_020--Hb_003626_070 Hb_033642_120 Hb_033642_120 Hb_003913_020--Hb_033642_120 Hb_002413_010 Hb_002413_010 Hb_003913_020--Hb_002413_010 Hb_000155_170 Hb_000155_170 Hb_003913_020--Hb_000155_170 Hb_000661_120 Hb_000661_120 Hb_003913_020--Hb_000661_120 Hb_000110_350 Hb_000110_350 Hb_002768_050--Hb_000110_350 Hb_000445_060 Hb_000445_060 Hb_002768_050--Hb_000445_060 Hb_000008_240 Hb_000008_240 Hb_002768_050--Hb_000008_240 Hb_000676_330 Hb_000676_330 Hb_002768_050--Hb_000676_330 Hb_004517_020 Hb_004517_020 Hb_002768_050--Hb_004517_020 Hb_003929_210 Hb_003929_210 Hb_002768_050--Hb_003929_210 Hb_001817_170 Hb_001817_170 Hb_003626_070--Hb_001817_170 Hb_000139_080 Hb_000139_080 Hb_003626_070--Hb_000139_080 Hb_001635_110 Hb_001635_110 Hb_003626_070--Hb_001635_110 Hb_006189_020 Hb_006189_020 Hb_003626_070--Hb_006189_020 Hb_000476_060 Hb_000476_060 Hb_003626_070--Hb_000476_060 Hb_000103_290 Hb_000103_290 Hb_003626_070--Hb_000103_290 Hb_000868_120 Hb_000868_120 Hb_033642_120--Hb_000868_120 Hb_003470_040 Hb_003470_040 Hb_033642_120--Hb_003470_040 Hb_000207_200 Hb_000207_200 Hb_033642_120--Hb_000207_200 Hb_001439_220 Hb_001439_220 Hb_033642_120--Hb_001439_220 Hb_033642_120--Hb_000661_120 Hb_010287_020 Hb_010287_020 Hb_033642_120--Hb_010287_020 Hb_183433_010 Hb_183433_010 Hb_002413_010--Hb_183433_010 Hb_027905_020 Hb_027905_020 Hb_002413_010--Hb_027905_020 Hb_002572_020 Hb_002572_020 Hb_002413_010--Hb_002572_020 Hb_007248_030 Hb_007248_030 Hb_002413_010--Hb_007248_030 Hb_000282_090 Hb_000282_090 Hb_002413_010--Hb_000282_090 Hb_003912_040 Hb_003912_040 Hb_002413_010--Hb_003912_040 Hb_001277_340 Hb_001277_340 Hb_000155_170--Hb_001277_340 Hb_009476_130 Hb_009476_130 Hb_000155_170--Hb_009476_130 Hb_087313_010 Hb_087313_010 Hb_000155_170--Hb_087313_010 Hb_017214_040 Hb_017214_040 Hb_000155_170--Hb_017214_040 Hb_102948_010 Hb_102948_010 Hb_000155_170--Hb_102948_010 Hb_000996_020 Hb_000996_020 Hb_000661_120--Hb_000996_020 Hb_000661_120--Hb_000445_060 Hb_000373_170 Hb_000373_170 Hb_000661_120--Hb_000373_170 Hb_000340_030 Hb_000340_030 Hb_000661_120--Hb_000340_030 Hb_000529_060 Hb_000529_060 Hb_000661_120--Hb_000529_060 Hb_000661_120--Hb_000868_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.46083 8.83361 9.11785 7.61177 5.75556 3.44759
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.58462 3.44107 2.36047 5.06329 7.02971

CAGE analysis