Hb_003913_030

Information

Type -
Description -
Location Contig3913: 21208-22380
Sequence    

Annotation

kegg
ID rcu:RCOM_1508860
description ATP binding protein, putative
nr
ID XP_012079985.1
description PREDICTED: uncharacterized protein LOC105640313 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KGR5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11410 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39199: 20791-22483
cDNA
(Sanger)
(ID:Location)		 006_D06.ab1: 21643-22483

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003913_030 0.0 - - PREDICTED: uncharacterized protein LOC105640313 [Jatropha curcas]
2 Hb_003531_040 0.136268172 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
3 Hb_000220_090 0.1390041465 - - PREDICTED: E3 ubiquitin-protein ligase RHA2A-like [Jatropha curcas]
4 Hb_006916_200 0.1520599293 - - hypothetical protein POPTR_0017s13190g, partial [Populus trichocarpa]
5 Hb_000117_060 0.1539589353 - - PREDICTED: uncharacterized protein LOC103949199 [Pyrus x bretschneideri]
6 Hb_056012_010 0.1572065987 - - PREDICTED: TMV resistance protein N-like [Pyrus x bretschneideri]
7 Hb_003637_020 0.1583711099 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001956_190 0.1590678253 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
9 Hb_011689_100 0.1631088371 - - PREDICTED: uncharacterized protein LOC105631864 [Jatropha curcas]
10 Hb_000270_770 0.166010186 - - PREDICTED: uncharacterized protein LOC105640410 [Jatropha curcas]
11 Hb_012258_020 0.1687210682 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
12 Hb_000336_190 0.1708151072 - - PREDICTED: UPF0481 protein At3g47200-like [Gossypium raimondii]
13 Hb_020967_010 0.176494965 - - -
14 Hb_185513_010 0.1768608461 - - conserved hypothetical protein [Ricinus communis]
15 Hb_187697_010 0.1791939015 - - TMV resistance protein N, putative [Ricinus communis]
16 Hb_000015_180 0.1803339753 transcription factor TF Family: ERF ethylene-responsive transcription factor 3-like [Jatropha curcas]
17 Hb_002233_070 0.1833959577 - - unnamed protein product [Vitis vinifera]
18 Hb_000003_430 0.1850215074 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
19 Hb_012787_040 0.1850342991 - - PREDICTED: uncharacterized protein LOC105649794 isoform X2 [Jatropha curcas]
20 Hb_001863_270 0.1873193913 - - hypothetical protein JCGZ_15813 [Jatropha curcas]

Gene co-expression network

sample Hb_003913_030 Hb_003913_030 Hb_003531_040 Hb_003531_040 Hb_003913_030--Hb_003531_040 Hb_000220_090 Hb_000220_090 Hb_003913_030--Hb_000220_090 Hb_006916_200 Hb_006916_200 Hb_003913_030--Hb_006916_200 Hb_000117_060 Hb_000117_060 Hb_003913_030--Hb_000117_060 Hb_056012_010 Hb_056012_010 Hb_003913_030--Hb_056012_010 Hb_003637_020 Hb_003637_020 Hb_003913_030--Hb_003637_020 Hb_003531_040--Hb_006916_200 Hb_020967_010 Hb_020967_010 Hb_003531_040--Hb_020967_010 Hb_005714_100 Hb_005714_100 Hb_003531_040--Hb_005714_100 Hb_011689_100 Hb_011689_100 Hb_003531_040--Hb_011689_100 Hb_002875_070 Hb_002875_070 Hb_003531_040--Hb_002875_070 Hb_000015_180 Hb_000015_180 Hb_000220_090--Hb_000015_180 Hb_003038_010 Hb_003038_010 Hb_000220_090--Hb_003038_010 Hb_000220_090--Hb_056012_010 Hb_000803_060 Hb_000803_060 Hb_000220_090--Hb_000803_060 Hb_102100_010 Hb_102100_010 Hb_000220_090--Hb_102100_010 Hb_000434_050 Hb_000434_050 Hb_000220_090--Hb_000434_050 Hb_000008_110 Hb_000008_110 Hb_006916_200--Hb_000008_110 Hb_000345_500 Hb_000345_500 Hb_006916_200--Hb_000345_500 Hb_006916_200--Hb_000220_090 Hb_001511_190 Hb_001511_190 Hb_006916_200--Hb_001511_190 Hb_006711_070 Hb_006711_070 Hb_000117_060--Hb_006711_070 Hb_000117_060--Hb_003637_020 Hb_185513_010 Hb_185513_010 Hb_000117_060--Hb_185513_010 Hb_001437_010 Hb_001437_010 Hb_000117_060--Hb_001437_010 Hb_012258_020 Hb_012258_020 Hb_000117_060--Hb_012258_020 Hb_138585_100 Hb_138585_100 Hb_000117_060--Hb_138585_100 Hb_056012_010--Hb_000803_060 Hb_056012_010--Hb_102100_010 Hb_001258_150 Hb_001258_150 Hb_056012_010--Hb_001258_150 Hb_056012_010--Hb_185513_010 Hb_001662_170 Hb_001662_170 Hb_056012_010--Hb_001662_170 Hb_003637_020--Hb_185513_010 Hb_103788_010 Hb_103788_010 Hb_003637_020--Hb_103788_010 Hb_003752_120 Hb_003752_120 Hb_003637_020--Hb_003752_120 Hb_012725_040 Hb_012725_040 Hb_003637_020--Hb_012725_040 Hb_003637_020--Hb_012258_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.18 156.221 34.8787 71.7054 8.56692 7.29724
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.71266 5.82602 6.53106 10.6277 2.84485

CAGE analysis