Hb_003913_070

Information

Type -
Description -
Location Contig3913: 40653-50637
Sequence    

Annotation

kegg
ID cit:102619005
description DEAD-box ATP-dependent RNA helicase 30-like
nr
ID XP_011047813.1
description PREDICTED: DEAD-box ATP-dependent RNA helicase 30 [Populus euphratica]
swissprot
ID Q9C718
description DEAD-box ATP-dependent RNA helicase 20 OS=Arabidopsis thaliana GN=RH20 PE=2 SV=1
trembl
ID A0A067K7M0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11414 PE=3 SV=1
Gene Ontology
ID GO:0003676
description dead-box atp-dependent rna helicase 20

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39203: 40694-50666
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003913_070 0.0 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 30 [Populus euphratica]
2 Hb_003734_010 0.0512291645 - - PREDICTED: double-strand break repair protein MRE11 [Jatropha curcas]
3 Hb_000111_290 0.0543530771 - - PREDICTED: E3 ubiquitin-protein ligase KEG [Jatropha curcas]
4 Hb_001417_030 0.0569173993 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
5 Hb_001999_310 0.0584028973 - - PREDICTED: lysosomal beta glucosidase-like [Jatropha curcas]
6 Hb_001814_030 0.0635592076 - - PREDICTED: uncharacterized protein LOC105650634 [Jatropha curcas]
7 Hb_003411_040 0.0640729129 - - unnamed protein product [Coffea canephora]
8 Hb_000920_300 0.0647009215 - - PREDICTED: flowering time control protein FY isoform X2 [Jatropha curcas]
9 Hb_127743_010 0.0665675177 - - PREDICTED: proteasome activator subunit 4 isoform X2 [Jatropha curcas]
10 Hb_006198_120 0.0675205417 - - PREDICTED: guanine nucleotide-binding protein-like NSN1 [Jatropha curcas]
11 Hb_002477_090 0.0681162935 - - PREDICTED: uncharacterized protein LOC105631409 isoform X1 [Jatropha curcas]
12 Hb_009270_020 0.0692668706 - - PREDICTED: LOW QUALITY PROTEIN: helicase and polymerase-containing protein TEBICHI [Jatropha curcas]
13 Hb_000406_200 0.0699642775 - - PREDICTED: translation initiation factor eIF-2B subunit epsilon-like isoform X4 [Jatropha curcas]
14 Hb_003517_040 0.0699826154 - - PREDICTED: putative DUF21 domain-containing protein At3g13070, chloroplastic [Jatropha curcas]
15 Hb_002456_010 0.0708275518 - - PREDICTED: protein kinase and PP2C-like domain-containing protein isoform X2 [Jatropha curcas]
16 Hb_000792_010 0.0709905809 - - PREDICTED: mRNA-capping enzyme [Jatropha curcas]
17 Hb_006520_040 0.0711143196 - - PREDICTED: uncharacterized protein LOC105641714 isoform X2 [Jatropha curcas]
18 Hb_000069_120 0.0714248501 - - PREDICTED: uncharacterized protein LOC105124742 isoform X1 [Populus euphratica]
19 Hb_009079_030 0.0717001163 - - PREDICTED: general transcription factor IIF subunit 2 [Jatropha curcas]
20 Hb_001671_100 0.0741446303 - - glycine-rich RNA-binding family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_003913_070 Hb_003913_070 Hb_003734_010 Hb_003734_010 Hb_003913_070--Hb_003734_010 Hb_000111_290 Hb_000111_290 Hb_003913_070--Hb_000111_290 Hb_001417_030 Hb_001417_030 Hb_003913_070--Hb_001417_030 Hb_001999_310 Hb_001999_310 Hb_003913_070--Hb_001999_310 Hb_001814_030 Hb_001814_030 Hb_003913_070--Hb_001814_030 Hb_003411_040 Hb_003411_040 Hb_003913_070--Hb_003411_040 Hb_004327_040 Hb_004327_040 Hb_003734_010--Hb_004327_040 Hb_003734_010--Hb_001814_030 Hb_009976_020 Hb_009976_020 Hb_003734_010--Hb_009976_020 Hb_003517_040 Hb_003517_040 Hb_003734_010--Hb_003517_040 Hb_012760_100 Hb_012760_100 Hb_003734_010--Hb_012760_100 Hb_000111_290--Hb_001417_030 Hb_004324_130 Hb_004324_130 Hb_000111_290--Hb_004324_130 Hb_002456_010 Hb_002456_010 Hb_000111_290--Hb_002456_010 Hb_000614_240 Hb_000614_240 Hb_000111_290--Hb_000614_240 Hb_000111_290--Hb_001999_310 Hb_000792_010 Hb_000792_010 Hb_001417_030--Hb_000792_010 Hb_002518_260 Hb_002518_260 Hb_001417_030--Hb_002518_260 Hb_001417_030--Hb_003411_040 Hb_001417_030--Hb_000614_240 Hb_001671_100 Hb_001671_100 Hb_001999_310--Hb_001671_100 Hb_027073_020 Hb_027073_020 Hb_001999_310--Hb_027073_020 Hb_001999_310--Hb_000614_240 Hb_001876_050 Hb_001876_050 Hb_001999_310--Hb_001876_050 Hb_001500_140 Hb_001500_140 Hb_001999_310--Hb_001500_140 Hb_029243_030 Hb_029243_030 Hb_001999_310--Hb_029243_030 Hb_004586_220 Hb_004586_220 Hb_001814_030--Hb_004586_220 Hb_002205_250 Hb_002205_250 Hb_001814_030--Hb_002205_250 Hb_000614_210 Hb_000614_210 Hb_001814_030--Hb_000614_210 Hb_012395_140 Hb_012395_140 Hb_001814_030--Hb_012395_140 Hb_159558_010 Hb_159558_010 Hb_001814_030--Hb_159558_010 Hb_020378_030 Hb_020378_030 Hb_001814_030--Hb_020378_030 Hb_003411_040--Hb_001814_030 Hb_003411_040--Hb_000792_010 Hb_000592_030 Hb_000592_030 Hb_003411_040--Hb_000592_030 Hb_004567_090 Hb_004567_090 Hb_003411_040--Hb_004567_090 Hb_003411_040--Hb_000111_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.22824 10.5391 6.82777 8.66324 8.07546 10.4157
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.88467 9.64843 7.21728 14.5054 10.8102

CAGE analysis