Hb_003913_110

Information

Type -
Description -
Location Contig3913: 91833-93635
Sequence    

Annotation

kegg
ID rcu:RCOM_1509330
description hypothetical protein
nr
ID XP_012079992.1
description PREDICTED: uncharacterized protein LOC105640319 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9RAW0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1509330 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003913_110 0.0 - - PREDICTED: uncharacterized protein LOC105640319 [Jatropha curcas]
2 Hb_001452_220 0.0791344715 - - PREDICTED: molybdopterin biosynthesis protein CNX1 [Jatropha curcas]
3 Hb_000608_230 0.0819969896 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial [Jatropha curcas]
4 Hb_011173_030 0.0882751631 - - pumilio, putative [Ricinus communis]
5 Hb_000307_210 0.0894667726 - - Transportin 1 isoform 1 [Theobroma cacao]
6 Hb_000740_100 0.0907634823 - - calpain, putative [Ricinus communis]
7 Hb_028487_010 0.0918005178 - - PREDICTED: mediator of RNA polymerase II transcription subunit 23 isoform X2 [Jatropha curcas]
8 Hb_000365_030 0.0923417441 - - PREDICTED: transmembrane protein 87B [Jatropha curcas]
9 Hb_000950_060 0.0939740157 - - PREDICTED: CCAAT/enhancer-binding protein zeta [Jatropha curcas]
10 Hb_005402_040 0.0954689893 - - PREDICTED: replication factor C subunit 1 [Jatropha curcas]
11 Hb_007123_050 0.0962028134 - - Vitellogenic carboxypeptidase, putative [Ricinus communis]
12 Hb_003927_010 0.096807578 - - Zinc-binding dehydrogenase family protein isoform 1 [Theobroma cacao]
13 Hb_005143_030 0.0971575488 - - PREDICTED: uncharacterized protein LOC105638843 [Jatropha curcas]
14 Hb_002909_090 0.097650655 - - PREDICTED: 4-alpha-glucanotransferase DPE2 [Jatropha curcas]
15 Hb_000046_180 0.0986483227 - - PREDICTED: uncharacterized protein LOC105631840 [Jatropha curcas]
16 Hb_003498_120 0.0987756714 - - hypothetical protein POPTR_0015s12430g, partial [Populus trichocarpa]
17 Hb_002005_080 0.1012852623 - - PREDICTED: uncharacterized protein LOC105649750 isoform X1 [Jatropha curcas]
18 Hb_004109_370 0.102867913 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
19 Hb_007576_210 0.1038341711 - - PREDICTED: protein furry homolog [Jatropha curcas]
20 Hb_041327_010 0.104958263 - - PREDICTED: la-related protein 1A isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003913_110 Hb_003913_110 Hb_001452_220 Hb_001452_220 Hb_003913_110--Hb_001452_220 Hb_000608_230 Hb_000608_230 Hb_003913_110--Hb_000608_230 Hb_011173_030 Hb_011173_030 Hb_003913_110--Hb_011173_030 Hb_000307_210 Hb_000307_210 Hb_003913_110--Hb_000307_210 Hb_000740_100 Hb_000740_100 Hb_003913_110--Hb_000740_100 Hb_028487_010 Hb_028487_010 Hb_003913_110--Hb_028487_010 Hb_003739_030 Hb_003739_030 Hb_001452_220--Hb_003739_030 Hb_002391_370 Hb_002391_370 Hb_001452_220--Hb_002391_370 Hb_001452_220--Hb_028487_010 Hb_002909_090 Hb_002909_090 Hb_001452_220--Hb_002909_090 Hb_001452_220--Hb_011173_030 Hb_005402_040 Hb_005402_040 Hb_000608_230--Hb_005402_040 Hb_140049_080 Hb_140049_080 Hb_000608_230--Hb_140049_080 Hb_178968_050 Hb_178968_050 Hb_000608_230--Hb_178968_050 Hb_000331_580 Hb_000331_580 Hb_000608_230--Hb_000331_580 Hb_003216_090 Hb_003216_090 Hb_000608_230--Hb_003216_090 Hb_000823_030 Hb_000823_030 Hb_000608_230--Hb_000823_030 Hb_011173_030--Hb_028487_010 Hb_011173_030--Hb_000740_100 Hb_104061_020 Hb_104061_020 Hb_011173_030--Hb_104061_020 Hb_002107_070 Hb_002107_070 Hb_011173_030--Hb_002107_070 Hb_002784_110 Hb_002784_110 Hb_011173_030--Hb_002784_110 Hb_001821_090 Hb_001821_090 Hb_011173_030--Hb_001821_090 Hb_000307_210--Hb_028487_010 Hb_000307_210--Hb_002107_070 Hb_003058_060 Hb_003058_060 Hb_000307_210--Hb_003058_060 Hb_000307_210--Hb_011173_030 Hb_010053_030 Hb_010053_030 Hb_000307_210--Hb_010053_030 Hb_000307_210--Hb_000740_100 Hb_002329_040 Hb_002329_040 Hb_000740_100--Hb_002329_040 Hb_000261_030 Hb_000261_030 Hb_000740_100--Hb_000261_030 Hb_000395_070 Hb_000395_070 Hb_000740_100--Hb_000395_070 Hb_008024_030 Hb_008024_030 Hb_000740_100--Hb_008024_030 Hb_000740_100--Hb_104061_020 Hb_028487_010--Hb_001821_090 Hb_028487_010--Hb_002107_070 Hb_028487_010--Hb_000740_100 Hb_005143_030 Hb_005143_030 Hb_028487_010--Hb_005143_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.9147 21.2341 9.52687 14.1879 21.6208 17.987
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.05711 5.26282 6.74661 31.8289 17.847

CAGE analysis