Hb_003915_030

Information

Type -
Description -
Location Contig3915: 41996-43303
Sequence    

Annotation

kegg
ID bvg:104901272
description uncharacterized LOC104901272
nr
ID XP_010687126.1
description PREDICTED: uncharacterized protein LOC104901272 [Beta vulgaris subsp. vulgaris]
swissprot
ID -
description -
trembl
ID A5AVY5
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_042679 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003915_030 0.0 - - PREDICTED: uncharacterized protein LOC104901272 [Beta vulgaris subsp. vulgaris]
2 Hb_006040_010 0.1285463741 - - cytochrome c oxidase subunit 3 (mitochondrion) [Hevea brasiliensis]
3 Hb_027522_020 0.1305197788 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
4 Hb_145745_010 0.1360900665 - - BnaUnng00830D [Brassica napus]
5 Hb_006040_020 0.1435692434 - - ATPase subunit 8 (mitochondrion) [Hevea brasiliensis]
6 Hb_001490_020 0.1456012579 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
7 Hb_007645_020 0.1471981591 - - NAD(P)H-quinone oxidoreductase subunit [Medicago truncatula]
8 Hb_005054_140 0.1488180808 - - PREDICTED: laccase-4-like [Jatropha curcas]
9 Hb_003693_040 0.1556642855 - - NADH dehydrogenase subunit 1 [Hevea brasiliensis]
10 Hb_054839_010 0.1567186172 - - PsbC, partial (chloroplast) [Asimina parviflora]
11 Hb_005352_010 0.1577862561 - - -
12 Hb_164415_010 0.1580934392 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000100_120 0.1596164747 - - RNA-directed DNA polymerase (Reverse transcriptase); Chromo; Zinc finger, CCHC-type; Peptidase aspartic, active site; Polynucleotidyl transferase, Ribonuclease H fold [Medicago truncatula]
14 Hb_151061_040 0.1596708078 - - putative retrotransposon protein [Phyllostachys edulis]
15 Hb_145745_030 0.1597980626 - - BnaC09g26890D [Brassica napus]
16 Hb_006778_010 0.1610703721 - - PREDICTED: uncharacterized protein LOC105803109 [Gossypium raimondii]
17 Hb_125153_010 0.1624085907 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1 [Malus domestica]
18 Hb_018283_010 0.1629545933 - - hypothetical protein VITISV_023498 [Vitis vinifera]
19 Hb_080126_010 0.1641119687 transcription factor TF Family: FAR1 hypothetical protein MIMGU_mgv1a025104mg, partial [Erythranthe guttata]
20 Hb_127361_010 0.1641650671 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]

Gene co-expression network

sample Hb_003915_030 Hb_003915_030 Hb_006040_010 Hb_006040_010 Hb_003915_030--Hb_006040_010 Hb_027522_020 Hb_027522_020 Hb_003915_030--Hb_027522_020 Hb_145745_010 Hb_145745_010 Hb_003915_030--Hb_145745_010 Hb_006040_020 Hb_006040_020 Hb_003915_030--Hb_006040_020 Hb_001490_020 Hb_001490_020 Hb_003915_030--Hb_001490_020 Hb_007645_020 Hb_007645_020 Hb_003915_030--Hb_007645_020 Hb_006040_010--Hb_006040_020 Hb_008085_020 Hb_008085_020 Hb_006040_010--Hb_008085_020 Hb_006040_030 Hb_006040_030 Hb_006040_010--Hb_006040_030 Hb_171685_080 Hb_171685_080 Hb_006040_010--Hb_171685_080 Hb_006040_010--Hb_007645_020 Hb_003688_030 Hb_003688_030 Hb_006040_010--Hb_003688_030 Hb_005352_010 Hb_005352_010 Hb_027522_020--Hb_005352_010 Hb_022599_010 Hb_022599_010 Hb_027522_020--Hb_022599_010 Hb_062317_010 Hb_062317_010 Hb_027522_020--Hb_062317_010 Hb_006778_010 Hb_006778_010 Hb_027522_020--Hb_006778_010 Hb_001255_070 Hb_001255_070 Hb_027522_020--Hb_001255_070 Hb_004138_020 Hb_004138_020 Hb_145745_010--Hb_004138_020 Hb_001081_070 Hb_001081_070 Hb_145745_010--Hb_001081_070 Hb_003477_020 Hb_003477_020 Hb_145745_010--Hb_003477_020 Hb_009095_020 Hb_009095_020 Hb_145745_010--Hb_009095_020 Hb_141708_010 Hb_141708_010 Hb_145745_010--Hb_141708_010 Hb_006331_010 Hb_006331_010 Hb_145745_010--Hb_006331_010 Hb_006040_020--Hb_006040_030 Hb_006040_020--Hb_171685_080 Hb_004987_040 Hb_004987_040 Hb_006040_020--Hb_004987_040 Hb_013420_050 Hb_013420_050 Hb_006040_020--Hb_013420_050 Hb_006040_020--Hb_008085_020 Hb_101462_010 Hb_101462_010 Hb_001490_020--Hb_101462_010 Hb_000336_130 Hb_000336_130 Hb_001490_020--Hb_000336_130 Hb_077242_020 Hb_077242_020 Hb_001490_020--Hb_077242_020 Hb_001490_020--Hb_013420_050 Hb_042463_070 Hb_042463_070 Hb_001490_020--Hb_042463_070 Hb_001490_020--Hb_006040_020 Hb_007645_020--Hb_003688_030 Hb_003693_040 Hb_003693_040 Hb_007645_020--Hb_003693_040 Hb_104509_010 Hb_104509_010 Hb_007645_020--Hb_104509_010 Hb_106850_010 Hb_106850_010 Hb_007645_020--Hb_106850_010 Hb_154980_010 Hb_154980_010 Hb_007645_020--Hb_154980_010 Hb_000959_380 Hb_000959_380 Hb_007645_020--Hb_000959_380
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0149241 0 0.0170344
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0139718 0.574187

CAGE analysis