Hb_003916_010

Information

Type transcription factor
Description TF Family: C3H
Location Contig3916: 3811-8643
Sequence    

Annotation

kegg
ID rcu:RCOM_1550840
description hypothetical protein
nr
ID XP_012086378.1
description PREDICTED: zinc finger CCCH domain-containing protein 13 [Jatropha curcas]
swissprot
ID Q6H7U2
description Zinc finger CCCH domain-containing protein 13 OS=Oryza sativa subsp. japonica GN=Os02g0161200 PE=2 SV=1
trembl
ID A0A067K235
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22894 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003916_010 0.0 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 13 [Jatropha curcas]
2 Hb_001034_070 0.0870835908 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_011716_020 0.090056409 - - PREDICTED: uncharacterized protein LOC105637783 [Jatropha curcas]
4 Hb_002028_170 0.0984861351 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 5 [Jatropha curcas]
5 Hb_004545_090 0.0998421819 - - conserved hypothetical protein [Ricinus communis]
6 Hb_010931_040 0.1001060418 - - PREDICTED: nijmegen breakage syndrome 1 protein [Jatropha curcas]
7 Hb_000785_080 0.1044519139 - - PREDICTED: zinc finger CCCH domain-containing protein 13 [Jatropha curcas]
8 Hb_067345_010 0.1066335087 - - PREDICTED: F-box protein CPR30-like [Jatropha curcas]
9 Hb_000158_100 0.1081007971 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000136_060 0.1100231324 - - hypothetical protein POPTR_0016s06250g [Populus trichocarpa]
11 Hb_004096_100 0.1114606602 - - PREDICTED: NADPH-dependent diflavin oxidoreductase 1 [Jatropha curcas]
12 Hb_005228_130 0.1131183509 - - PREDICTED: uncharacterized protein At3g15000, mitochondrial isoform X1 [Jatropha curcas]
13 Hb_002600_140 0.1134340867 - - PREDICTED: protein FLX-like 2 [Jatropha curcas]
14 Hb_002551_070 0.113506562 - - hypothetical protein POPTR_0019s10130g [Populus trichocarpa]
15 Hb_005725_170 0.1139429637 - - PREDICTED: pre-mRNA-processing protein 40A isoform X2 [Jatropha curcas]
16 Hb_002027_270 0.1148035689 - - PREDICTED: serine/threonine-protein phosphatase BSL1 [Jatropha curcas]
17 Hb_029142_010 0.1152688266 - - PREDICTED: H/ACA ribonucleoprotein complex subunit 4 [Jatropha curcas]
18 Hb_005494_020 0.1154224386 - - PREDICTED: transmembrane protein 184 homolog DDB_G0279555 [Jatropha curcas]
19 Hb_003623_030 0.1160543943 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 14 [Jatropha curcas]
20 Hb_032631_040 0.1173131471 - - PREDICTED: uncharacterized protein LOC105638769 [Jatropha curcas]

Gene co-expression network

sample Hb_003916_010 Hb_003916_010 Hb_001034_070 Hb_001034_070 Hb_003916_010--Hb_001034_070 Hb_011716_020 Hb_011716_020 Hb_003916_010--Hb_011716_020 Hb_002028_170 Hb_002028_170 Hb_003916_010--Hb_002028_170 Hb_004545_090 Hb_004545_090 Hb_003916_010--Hb_004545_090 Hb_010931_040 Hb_010931_040 Hb_003916_010--Hb_010931_040 Hb_000785_080 Hb_000785_080 Hb_003916_010--Hb_000785_080 Hb_000369_130 Hb_000369_130 Hb_001034_070--Hb_000369_130 Hb_000613_080 Hb_000613_080 Hb_001034_070--Hb_000613_080 Hb_000158_100 Hb_000158_100 Hb_001034_070--Hb_000158_100 Hb_006355_090 Hb_006355_090 Hb_001034_070--Hb_006355_090 Hb_001617_060 Hb_001617_060 Hb_001034_070--Hb_001617_060 Hb_011716_020--Hb_002028_170 Hb_002974_060 Hb_002974_060 Hb_011716_020--Hb_002974_060 Hb_002600_140 Hb_002600_140 Hb_011716_020--Hb_002600_140 Hb_000023_190 Hb_000023_190 Hb_011716_020--Hb_000023_190 Hb_002027_270 Hb_002027_270 Hb_011716_020--Hb_002027_270 Hb_000600_070 Hb_000600_070 Hb_011716_020--Hb_000600_070 Hb_003623_030 Hb_003623_030 Hb_002028_170--Hb_003623_030 Hb_002028_170--Hb_000158_100 Hb_000136_060 Hb_000136_060 Hb_002028_170--Hb_000136_060 Hb_007904_220 Hb_007904_220 Hb_002028_170--Hb_007904_220 Hb_000343_030 Hb_000343_030 Hb_002028_170--Hb_000343_030 Hb_100215_010 Hb_100215_010 Hb_004545_090--Hb_100215_010 Hb_003010_020 Hb_003010_020 Hb_004545_090--Hb_003010_020 Hb_000990_090 Hb_000990_090 Hb_004545_090--Hb_000990_090 Hb_004545_090--Hb_000023_190 Hb_011918_040 Hb_011918_040 Hb_004545_090--Hb_011918_040 Hb_002909_090 Hb_002909_090 Hb_004545_090--Hb_002909_090 Hb_003464_020 Hb_003464_020 Hb_010931_040--Hb_003464_020 Hb_002235_160 Hb_002235_160 Hb_010931_040--Hb_002235_160 Hb_002044_060 Hb_002044_060 Hb_010931_040--Hb_002044_060 Hb_001085_320 Hb_001085_320 Hb_010931_040--Hb_001085_320 Hb_010931_040--Hb_000023_190 Hb_000567_050 Hb_000567_050 Hb_010931_040--Hb_000567_050 Hb_003641_060 Hb_003641_060 Hb_000785_080--Hb_003641_060 Hb_004934_070 Hb_004934_070 Hb_000785_080--Hb_004934_070 Hb_000083_160 Hb_000083_160 Hb_000785_080--Hb_000083_160 Hb_000785_080--Hb_003010_020 Hb_000038_080 Hb_000038_080 Hb_000785_080--Hb_000038_080 Hb_004881_020 Hb_004881_020 Hb_000785_080--Hb_004881_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.23675 4.96207 2.76858 4.47152 5.20385 15.1043
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.77504 2.84923 2.44947 8.65223 4.01539

CAGE analysis