Hb_003918_010

Information

Type -
Description -
Location Contig3918: 4187-9295
Sequence    

Annotation

kegg
ID rcu:RCOM_1032390
description biotin protein ligase, putative (EC:6.3.4.15)
nr
ID XP_012078166.1
description PREDICTED: biotin--protein ligase 2-like [Jatropha curcas]
swissprot
ID Q9SL92
description Biotin--protein ligase 1, chloroplastic OS=Arabidopsis thaliana GN=HCS1 PE=1 SV=2
trembl
ID A0A067KKH3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12047 PE=4 SV=1
Gene Ontology
ID GO:0004077
description biotin--protein ligase 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39226: 4552-11434
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003918_010 0.0 - - PREDICTED: biotin--protein ligase 2-like [Jatropha curcas]
2 Hb_172426_040 0.0508132604 - - PREDICTED: ELL-associated factor 1 [Jatropha curcas]
3 Hb_000221_160 0.0606032494 - - PREDICTED: cytochrome c oxidase subunit 6b-1 [Jatropha curcas]
4 Hb_001140_370 0.0685341808 - - PREDICTED: uncharacterized protein LOC105648463 [Jatropha curcas]
5 Hb_002473_130 0.0689357338 - - PREDICTED: THO complex subunit 3 isoform X1 [Jatropha curcas]
6 Hb_000028_590 0.0712978984 - - PREDICTED: putative serine/threonine-protein kinase [Jatropha curcas]
7 Hb_008511_120 0.0725756691 - - NADH-ubiquinone oxidoreductase 1, chain, putative [Ricinus communis]
8 Hb_001369_690 0.0739505877 - - PREDICTED: hypersensitive-induced response protein 4 [Jatropha curcas]
9 Hb_008900_010 0.0747401517 - - PREDICTED: uncharacterized protein LOC105773666 [Gossypium raimondii]
10 Hb_032202_190 0.0748722536 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 21 [Gossypium raimondii]
11 Hb_000020_060 0.0751136882 - - PREDICTED: trafficking protein particle complex subunit 4 [Jatropha curcas]
12 Hb_003226_140 0.0753717433 - - small nuclear ribonucleoprotein U)1a,U)2b, putative [Ricinus communis]
13 Hb_001575_090 0.0754587985 - - PREDICTED: putative glucose-6-phosphate 1-epimerase [Jatropha curcas]
14 Hb_024071_020 0.0757586893 - - PREDICTED: uncharacterized protein LOC105639166 [Jatropha curcas]
15 Hb_003092_040 0.0765207443 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 3 isoform X2 [Pyrus x bretschneideri]
16 Hb_000030_030 0.0769895947 - - PREDICTED: ADP-glucose phosphorylase [Jatropha curcas]
17 Hb_012053_070 0.0775271084 - - PREDICTED: uncharacterized protein LOC105637344 [Jatropha curcas]
18 Hb_005357_080 0.077530568 - - PREDICTED: tyrosyl-DNA phosphodiesterase 1 [Jatropha curcas]
19 Hb_005846_040 0.0785243382 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 4 [Populus euphratica]
20 Hb_006059_050 0.0788049604 - - PREDICTED: polyadenylate-binding protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_003918_010 Hb_003918_010 Hb_172426_040 Hb_172426_040 Hb_003918_010--Hb_172426_040 Hb_000221_160 Hb_000221_160 Hb_003918_010--Hb_000221_160 Hb_001140_370 Hb_001140_370 Hb_003918_010--Hb_001140_370 Hb_002473_130 Hb_002473_130 Hb_003918_010--Hb_002473_130 Hb_000028_590 Hb_000028_590 Hb_003918_010--Hb_000028_590 Hb_008511_120 Hb_008511_120 Hb_003918_010--Hb_008511_120 Hb_003787_010 Hb_003787_010 Hb_172426_040--Hb_003787_010 Hb_006059_050 Hb_006059_050 Hb_172426_040--Hb_006059_050 Hb_000020_060 Hb_000020_060 Hb_172426_040--Hb_000020_060 Hb_000982_090 Hb_000982_090 Hb_172426_040--Hb_000982_090 Hb_004116_190 Hb_004116_190 Hb_172426_040--Hb_004116_190 Hb_012053_070 Hb_012053_070 Hb_000221_160--Hb_012053_070 Hb_000270_370 Hb_000270_370 Hb_000221_160--Hb_000270_370 Hb_000363_360 Hb_000363_360 Hb_000221_160--Hb_000363_360 Hb_000331_200 Hb_000331_200 Hb_000221_160--Hb_000331_200 Hb_033594_150 Hb_033594_150 Hb_000221_160--Hb_033594_150 Hb_024071_020 Hb_024071_020 Hb_001140_370--Hb_024071_020 Hb_001016_030 Hb_001016_030 Hb_001140_370--Hb_001016_030 Hb_001157_020 Hb_001157_020 Hb_001140_370--Hb_001157_020 Hb_001140_370--Hb_006059_050 Hb_001140_370--Hb_172426_040 Hb_002271_020 Hb_002271_020 Hb_002473_130--Hb_002271_020 Hb_003226_140 Hb_003226_140 Hb_002473_130--Hb_003226_140 Hb_143398_010 Hb_143398_010 Hb_002473_130--Hb_143398_010 Hb_005291_030 Hb_005291_030 Hb_002473_130--Hb_005291_030 Hb_001279_150 Hb_001279_150 Hb_002473_130--Hb_001279_150 Hb_005489_060 Hb_005489_060 Hb_002473_130--Hb_005489_060 Hb_000010_460 Hb_000010_460 Hb_000028_590--Hb_000010_460 Hb_008900_010 Hb_008900_010 Hb_000028_590--Hb_008900_010 Hb_001427_110 Hb_001427_110 Hb_000028_590--Hb_001427_110 Hb_000028_590--Hb_000020_060 Hb_005914_010 Hb_005914_010 Hb_000028_590--Hb_005914_010 Hb_032808_010 Hb_032808_010 Hb_008511_120--Hb_032808_010 Hb_005271_220 Hb_005271_220 Hb_008511_120--Hb_005271_220 Hb_002232_410 Hb_002232_410 Hb_008511_120--Hb_002232_410 Hb_000521_320 Hb_000521_320 Hb_008511_120--Hb_000521_320 Hb_005357_080 Hb_005357_080 Hb_008511_120--Hb_005357_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.83486 3.99293 5.28186 7.22415 6.64361 7.69014
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.8241 10.6249 8.03459 7.91192 3.69595

CAGE analysis