Hb_003921_010

Information

Type -
Description -
Location Contig3921: 45925-48089
Sequence    

Annotation

kegg
ID rcu:RCOM_0865030
description hypothetical protein
nr
ID XP_002519839.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID O49696
description Aluminum-activated malate transporter 12 OS=Arabidopsis thaliana GN=ALMT12 PE=2 SV=1
trembl
ID B9S1H4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0865030 PE=4 SV=1
Gene Ontology
ID GO:0015743
description aluminum-activated malate transporter 12-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003921_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_005245_110 0.0272111649 - - hypothetical protein CISIN_1g0225141mg [Citrus sinensis]
3 Hb_005605_010 0.0568755257 - - hypothetical protein POPTR_0019s13220g [Populus trichocarpa]
4 Hb_004837_230 0.0634960591 - - unknown [Populus trichocarpa]
5 Hb_000003_490 0.0651008354 - - PREDICTED: uncharacterized protein LOC105631559 isoform X2 [Jatropha curcas]
6 Hb_001823_010 0.0681048249 - - PREDICTED: ribosome-inactivating protein cucurmosin-like [Jatropha curcas]
7 Hb_000191_090 0.069251738 transcription factor TF Family: MYB GHMYB10, putative [Theobroma cacao]
8 Hb_000083_020 0.0726181643 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
9 Hb_007101_120 0.0735596223 - - PREDICTED: uncharacterized protein LOC105649846 [Jatropha curcas]
10 Hb_000482_170 0.0758704338 transcription factor TF Family: C2C2-GATA GATA nirate-inducible carbon-metabolism involved protein [Populus nigra x Populus x canadensis]
11 Hb_000937_010 0.0863174371 - - conserved hypothetical protein [Ricinus communis]
12 Hb_020805_050 0.0888680125 - - PREDICTED: MLO-like protein 9 [Jatropha curcas]
13 Hb_006665_020 0.089602521 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
14 Hb_099182_010 0.0915089692 - - PREDICTED: uncharacterized protein LOC101214783 [Cucumis sativus]
15 Hb_000165_170 0.0944371584 transcription factor TF Family: G2-like hypothetical protein POPTR_0010s19310g [Populus trichocarpa]
16 Hb_160045_010 0.0983499804 - - conserved hypothetical protein [Ricinus communis]
17 Hb_006901_010 0.0986055715 - - hypothetical protein JCGZ_20722 [Jatropha curcas]
18 Hb_008484_080 0.1006230532 - - PREDICTED: crocetin glucosyltransferase, chloroplastic-like [Jatropha curcas]
19 Hb_001736_010 0.102655432 - - ring finger protein, putative [Ricinus communis]
20 Hb_025325_010 0.1026731987 - - hypothetical protein JCGZ_09061 [Jatropha curcas]

Gene co-expression network

sample Hb_003921_010 Hb_003921_010 Hb_005245_110 Hb_005245_110 Hb_003921_010--Hb_005245_110 Hb_005605_010 Hb_005605_010 Hb_003921_010--Hb_005605_010 Hb_004837_230 Hb_004837_230 Hb_003921_010--Hb_004837_230 Hb_000003_490 Hb_000003_490 Hb_003921_010--Hb_000003_490 Hb_001823_010 Hb_001823_010 Hb_003921_010--Hb_001823_010 Hb_000191_090 Hb_000191_090 Hb_003921_010--Hb_000191_090 Hb_005245_110--Hb_005605_010 Hb_005245_110--Hb_004837_230 Hb_000083_020 Hb_000083_020 Hb_005245_110--Hb_000083_020 Hb_000482_170 Hb_000482_170 Hb_005245_110--Hb_000482_170 Hb_005245_110--Hb_001823_010 Hb_005605_010--Hb_000083_020 Hb_005605_010--Hb_000482_170 Hb_005605_010--Hb_004837_230 Hb_006901_010 Hb_006901_010 Hb_005605_010--Hb_006901_010 Hb_004837_230--Hb_000083_020 Hb_004525_010 Hb_004525_010 Hb_004837_230--Hb_004525_010 Hb_007101_120 Hb_007101_120 Hb_004837_230--Hb_007101_120 Hb_004837_230--Hb_000482_170 Hb_000003_490--Hb_001823_010 Hb_000003_490--Hb_000191_090 Hb_000003_490--Hb_005245_110 Hb_099182_010 Hb_099182_010 Hb_000003_490--Hb_099182_010 Hb_000003_490--Hb_000482_170 Hb_001823_010--Hb_000083_020 Hb_001736_010 Hb_001736_010 Hb_001823_010--Hb_001736_010 Hb_001823_010--Hb_000482_170 Hb_001823_010--Hb_005605_010 Hb_000191_090--Hb_099182_010 Hb_040323_010 Hb_040323_010 Hb_000191_090--Hb_040323_010 Hb_004724_440 Hb_004724_440 Hb_000191_090--Hb_004724_440 Hb_008484_080 Hb_008484_080 Hb_000191_090--Hb_008484_080 Hb_171810_030 Hb_171810_030 Hb_000191_090--Hb_171810_030 Hb_023313_050 Hb_023313_050 Hb_000191_090--Hb_023313_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0926698 5.86872 0.352972 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 7.55885

CAGE analysis