Hb_003922_010

Information

Type -
Description -
Location Contig3922: 16145-18385
Sequence    

Annotation

kegg
ID pop:POPTR_0003s12620g
description POPTRDRAFT_749200; glutathione peroxidase family protein
nr
ID XP_012086921.1
description PREDICTED: probable phospholipid hydroperoxide glutathione peroxidase [Jatropha curcas]
swissprot
ID O48646
description Probable phospholipid hydroperoxide glutathione peroxidase 6, mitochondrial OS=Arabidopsis thaliana GN=GPX6 PE=2 SV=2
trembl
ID A0A067JNI8
description Glutathione peroxidase OS=Jatropha curcas GN=JCGZ_20603 PE=3 SV=1
Gene Ontology
ID GO:0004602
description probable phospholipid hydroperoxide glutathione peroxidase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39315: 16270-18378 , PASA_asmbl_39316: 17010-18378
cDNA
(Sanger)
(ID:Location)		 007_A17.ab1: 16386-18193 , 021_B18.ab1: 16270-17984 , 025_H01.ab1: 18197-18369 , 030_G19.ab1: 16393-17985 , 032_I24.ab1: 16408-18101 , 040_J06.ab1: 18197-18369 , 045_M17.ab1: 16285-17928 , 046_M09.ab1: 16416-18220 , 050_F19.ab1: 16387-18139

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003922_010 0.0 - - PREDICTED: probable phospholipid hydroperoxide glutathione peroxidase [Jatropha curcas]
2 Hb_000212_330 0.0808263761 - - PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase 1, chloroplastic isoform X1 [Jatropha curcas]
3 Hb_003226_140 0.0812111146 - - small nuclear ribonucleoprotein U)1a,U)2b, putative [Ricinus communis]
4 Hb_000468_060 0.0947353854 - - ku P70 DNA helicase, putative [Ricinus communis]
5 Hb_002303_070 0.0986768153 - - PREDICTED: uncharacterized RNA-binding protein C1827.05c [Jatropha curcas]
6 Hb_001662_150 0.098768292 - - Scaffold attachment factor B1 [Medicago truncatula]
7 Hb_004127_030 0.0998048116 - - putative Rab geranylgeranyl transferase type II beta subunit family protein [Populus trichocarpa]
8 Hb_000039_220 0.1021111836 - - PREDICTED: vesicle-associated protein 4-2-like [Gossypium raimondii]
9 Hb_002473_130 0.1022896268 - - PREDICTED: THO complex subunit 3 isoform X1 [Jatropha curcas]
10 Hb_089995_010 0.1049993257 - - PREDICTED: phosphatidylinositol glycan anchor biosynthesis class U protein-like [Eucalyptus grandis]
11 Hb_000019_030 0.1050490442 - - PREDICTED: V-type proton ATPase subunit C [Gossypium raimondii]
12 Hb_003918_010 0.1056446423 - - PREDICTED: biotin--protein ligase 2-like [Jatropha curcas]
13 Hb_004070_020 0.1061362386 - - rhythmically-expressed protein 2 protein, putative [Ricinus communis]
14 Hb_009545_080 0.1061692546 - - hypothetical protein POPTR_0008s15400g [Populus trichocarpa]
15 Hb_008748_040 0.1062507951 - - beta-hydroxyacyl-acyl carrier protein dehydratase [Hevea brasiliensis]
16 Hb_001124_090 0.1068319529 - - acyl carrier protein, putative [Ricinus communis]
17 Hb_005357_080 0.1075105956 - - PREDICTED: tyrosyl-DNA phosphodiesterase 1 [Jatropha curcas]
18 Hb_065500_060 0.1075278223 - - PREDICTED: uncharacterized protein LOC105633723 [Jatropha curcas]
19 Hb_000094_300 0.1078233513 - - hypothetical protein POPTR_0002s26360g [Populus trichocarpa]
20 Hb_000025_470 0.1081073028 - - PREDICTED: signal peptide peptidase [Jatropha curcas]

Gene co-expression network

sample Hb_003922_010 Hb_003922_010 Hb_000212_330 Hb_000212_330 Hb_003922_010--Hb_000212_330 Hb_003226_140 Hb_003226_140 Hb_003922_010--Hb_003226_140 Hb_000468_060 Hb_000468_060 Hb_003922_010--Hb_000468_060 Hb_002303_070 Hb_002303_070 Hb_003922_010--Hb_002303_070 Hb_001662_150 Hb_001662_150 Hb_003922_010--Hb_001662_150 Hb_004127_030 Hb_004127_030 Hb_003922_010--Hb_004127_030 Hb_009545_080 Hb_009545_080 Hb_000212_330--Hb_009545_080 Hb_000094_300 Hb_000094_300 Hb_000212_330--Hb_000094_300 Hb_008748_040 Hb_008748_040 Hb_000212_330--Hb_008748_040 Hb_008511_130 Hb_008511_130 Hb_000212_330--Hb_008511_130 Hb_054865_120 Hb_054865_120 Hb_000212_330--Hb_054865_120 Hb_000883_020 Hb_000883_020 Hb_000212_330--Hb_000883_020 Hb_003226_140--Hb_002303_070 Hb_000215_110 Hb_000215_110 Hb_003226_140--Hb_000215_110 Hb_002473_130 Hb_002473_130 Hb_003226_140--Hb_002473_130 Hb_003226_140--Hb_000468_060 Hb_001599_040 Hb_001599_040 Hb_003226_140--Hb_001599_040 Hb_005357_080 Hb_005357_080 Hb_003226_140--Hb_005357_080 Hb_000019_030 Hb_000019_030 Hb_000468_060--Hb_000019_030 Hb_001575_090 Hb_001575_090 Hb_000468_060--Hb_001575_090 Hb_000768_090 Hb_000768_090 Hb_000468_060--Hb_000768_090 Hb_000035_180 Hb_000035_180 Hb_000468_060--Hb_000035_180 Hb_000120_670 Hb_000120_670 Hb_000468_060--Hb_000120_670 Hb_002303_070--Hb_000215_110 Hb_002303_070--Hb_001599_040 Hb_005730_120 Hb_005730_120 Hb_002303_070--Hb_005730_120 Hb_002303_070--Hb_005357_080 Hb_005271_220 Hb_005271_220 Hb_002303_070--Hb_005271_220 Hb_007163_070 Hb_007163_070 Hb_001662_150--Hb_007163_070 Hb_001662_150--Hb_003226_140 Hb_000329_200 Hb_000329_200 Hb_001662_150--Hb_000329_200 Hb_005697_060 Hb_005697_060 Hb_001662_150--Hb_005697_060 Hb_001157_020 Hb_001157_020 Hb_001662_150--Hb_001157_020 Hb_005306_170 Hb_005306_170 Hb_001662_150--Hb_005306_170 Hb_000862_030 Hb_000862_030 Hb_004127_030--Hb_000862_030 Hb_000159_090 Hb_000159_090 Hb_004127_030--Hb_000159_090 Hb_026198_070 Hb_026198_070 Hb_004127_030--Hb_026198_070 Hb_011671_040 Hb_011671_040 Hb_004127_030--Hb_011671_040 Hb_000270_490 Hb_000270_490 Hb_004127_030--Hb_000270_490 Hb_001366_370 Hb_001366_370 Hb_004127_030--Hb_001366_370
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
234.594 113.924 348.02 234.818 218.781 411.75
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
532.748 305.626 285.526 301.55 179.613

CAGE analysis