Hb_003925_030

Information

Type -
Description -
Location Contig3925: 20581-20901
Sequence    

Annotation

kegg
ID rcu:RCOM_0750160
description hypothetical protein
nr
ID XP_002529614.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SUE5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0750160 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003925_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_131967_010 0.2179564719 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
3 Hb_006769_010 0.2250968163 - - hypothetical protein JCGZ_00291 [Jatropha curcas]
4 Hb_000023_160 0.2296307006 - - PREDICTED: uncharacterized protein LOC105636423 isoform X1 [Jatropha curcas]
5 Hb_000029_100 0.2343297975 - - PREDICTED: nicalin-1-like isoform X2 [Populus euphratica]
6 Hb_002148_020 0.2427013783 - - aldo-keto reductase, putative [Ricinus communis]
7 Hb_000415_070 0.2562967125 - - -
8 Hb_001769_080 0.2591741903 - - hypothetical protein SORBIDRAFT_10g023200 [Sorghum bicolor]
9 Hb_067466_010 0.2653009701 - - ankyrin repeat protein [Bruguiera gymnorhiza]
10 Hb_000021_100 0.2654494235 - - -
11 Hb_005754_010 0.2672066697 - - hypothetical protein POPTR_0660s00210g [Populus trichocarpa]
12 Hb_000157_080 0.2673490322 transcription factor TF Family: GNAT PREDICTED: uncharacterized N-acetyltransferase ycf52 [Jatropha curcas]
13 Hb_000136_180 0.2678314288 - - ribosomal protein S28, putative [Ricinus communis]
14 Hb_002217_470 0.2681039926 - - PREDICTED: uncharacterized protein LOC105643559 [Jatropha curcas]
15 Hb_001227_100 0.2727816571 - - RecName: Full=Enolase 1; AltName: Full=2-phospho-D-glycerate hydro-lyase 1; AltName: Full=2-phosphoglycerate dehydratase 1; AltName: Allergen=Hev b 9 [Hevea brasiliensis]
16 Hb_001195_160 0.2753731997 - - -
17 Hb_000574_280 0.2754155716 - - hypothetical protein POPTR_0006s28780g [Populus trichocarpa]
18 Hb_151939_010 0.2760528597 - - PREDICTED: far upstream element-binding protein 2 isoform X3 [Jatropha curcas]
19 Hb_000029_090 0.2775011839 - - Nicalin precursor, putative [Ricinus communis]
20 Hb_099878_050 0.2789375189 - - PREDICTED: uncharacterized protein LOC105123495 isoform X2 [Populus euphratica]

Gene co-expression network

sample Hb_003925_030 Hb_003925_030 Hb_131967_010 Hb_131967_010 Hb_003925_030--Hb_131967_010 Hb_006769_010 Hb_006769_010 Hb_003925_030--Hb_006769_010 Hb_000023_160 Hb_000023_160 Hb_003925_030--Hb_000023_160 Hb_000029_100 Hb_000029_100 Hb_003925_030--Hb_000029_100 Hb_002148_020 Hb_002148_020 Hb_003925_030--Hb_002148_020 Hb_000415_070 Hb_000415_070 Hb_003925_030--Hb_000415_070 Hb_131967_010--Hb_002148_020 Hb_000001_190 Hb_000001_190 Hb_131967_010--Hb_000001_190 Hb_005754_010 Hb_005754_010 Hb_131967_010--Hb_005754_010 Hb_003464_080 Hb_003464_080 Hb_131967_010--Hb_003464_080 Hb_000530_010 Hb_000530_010 Hb_131967_010--Hb_000530_010 Hb_001769_080 Hb_001769_080 Hb_131967_010--Hb_001769_080 Hb_006769_010--Hb_000029_100 Hb_000130_060 Hb_000130_060 Hb_006769_010--Hb_000130_060 Hb_004724_120 Hb_004724_120 Hb_006769_010--Hb_004724_120 Hb_002836_100 Hb_002836_100 Hb_006769_010--Hb_002836_100 Hb_134894_010 Hb_134894_010 Hb_006769_010--Hb_134894_010 Hb_002217_470 Hb_002217_470 Hb_000023_160--Hb_002217_470 Hb_000317_160 Hb_000317_160 Hb_000023_160--Hb_000317_160 Hb_009615_020 Hb_009615_020 Hb_000023_160--Hb_009615_020 Hb_002685_150 Hb_002685_150 Hb_000023_160--Hb_002685_150 Hb_000654_030 Hb_000654_030 Hb_000023_160--Hb_000654_030 Hb_001140_070 Hb_001140_070 Hb_000023_160--Hb_001140_070 Hb_000029_090 Hb_000029_090 Hb_000029_100--Hb_000029_090 Hb_000926_230 Hb_000926_230 Hb_000029_100--Hb_000926_230 Hb_133724_010 Hb_133724_010 Hb_000029_100--Hb_133724_010 Hb_099878_050 Hb_099878_050 Hb_000029_100--Hb_099878_050 Hb_005686_120 Hb_005686_120 Hb_000029_100--Hb_005686_120 Hb_006698_040 Hb_006698_040 Hb_002148_020--Hb_006698_040 Hb_000025_630 Hb_000025_630 Hb_002148_020--Hb_000025_630 Hb_122548_010 Hb_122548_010 Hb_002148_020--Hb_122548_010 Hb_088163_010 Hb_088163_010 Hb_002148_020--Hb_088163_010 Hb_085972_010 Hb_085972_010 Hb_002148_020--Hb_085972_010 Hb_001517_030 Hb_001517_030 Hb_000415_070--Hb_001517_030 Hb_143800_010 Hb_143800_010 Hb_000415_070--Hb_143800_010 Hb_005542_090 Hb_005542_090 Hb_000415_070--Hb_005542_090 Hb_017462_010 Hb_017462_010 Hb_000415_070--Hb_017462_010 Hb_015026_150 Hb_015026_150 Hb_000415_070--Hb_015026_150 Hb_000136_180 Hb_000136_180 Hb_000415_070--Hb_000136_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.19809 0.148768 0.575087 1.63544 0.53349 1.6732
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.317509 0.999099 0 2.05523 0

CAGE analysis