Hb_003925_060

Information

Type -
Description -
Location Contig3925: 42713-69696
Sequence    

Annotation

kegg
ID pop:POPTR_0016s05540g
description POPTRDRAFT_825112; cyclin-related family protein
nr
ID XP_012086147.1
description PREDICTED: uncharacterized protein LOC105645218 isoform X1 [Jatropha curcas]
swissprot
ID Q8IGJ0
description Protein EFR3 homolog cmp44E OS=Drosophila melanogaster GN=stmA PE=2 SV=3
trembl
ID B9II73
description Cyclin-related family protein OS=Populus trichocarpa GN=POPTR_0016s05540g PE=4 SV=1
Gene Ontology
ID GO:0005488
description cyclin-related family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39324: 43137-43663 , PASA_asmbl_39325: 43860-52895 , PASA_asmbl_39326: 53803-57166 , PASA_asmbl_39327: 57411-57693 , PASA_asmbl_39328: 57752-58764 , PASA_asmbl_39329: 58997-67428 , PASA_asmbl_39330: 67459-69171
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003925_060 0.0 - - PREDICTED: uncharacterized protein LOC105645218 isoform X1 [Jatropha curcas]
2 Hb_009178_010 0.0742852141 - - PREDICTED: uncharacterized protein LOC105637474 [Jatropha curcas]
3 Hb_001396_070 0.0752176019 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000640_190 0.0772616338 - - PREDICTED: proline-rich receptor-like protein kinase PERK3 isoform X1 [Jatropha curcas]
5 Hb_002249_020 0.0772878784 - - PREDICTED: dual specificity protein phosphatase PHS1 [Jatropha curcas]
6 Hb_001277_340 0.0846865287 - - aldo/keto reductase, putative [Ricinus communis]
7 Hb_002686_410 0.0878593315 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 48 kDa protein-like isoform X2 [Jatropha curcas]
8 Hb_033152_090 0.0889022387 - - PREDICTED: serine/threonine-protein kinase SRK2E isoform X2 [Gossypium raimondii]
9 Hb_006846_170 0.0902410741 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX10L [Jatropha curcas]
10 Hb_001009_120 0.0905404269 - - PREDICTED: transcription factor GTE10 isoform X2 [Jatropha curcas]
11 Hb_000878_160 0.0913435927 - - PREDICTED: D-lactate dehydrogenase [cytochrome], mitochondrial [Jatropha curcas]
12 Hb_000179_190 0.094496662 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 4 isoform X1 [Vitis vinifera]
13 Hb_000836_540 0.0955115396 - - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Theobroma cacao]
14 Hb_004718_060 0.0955382844 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 isoform X1 [Jatropha curcas]
15 Hb_000956_040 0.0956357899 - - PREDICTED: probable E3 ubiquitin-protein ligase HIP1 [Jatropha curcas]
16 Hb_000603_190 0.0956674945 - - PREDICTED: serine/arginine repetitive matrix protein 2-like [Jatropha curcas]
17 Hb_005873_020 0.0960982696 - - PREDICTED: ATP-dependent zinc metalloprotease FtsH [Jatropha curcas]
18 Hb_033642_120 0.0988541148 - - PREDICTED: nucleolar GTP-binding protein 2 [Vitis vinifera]
19 Hb_000030_140 0.0992392041 - - PREDICTED: general negative regulator of transcription subunit 3 isoform X1 [Jatropha curcas]
20 Hb_000327_330 0.0998616006 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003925_060 Hb_003925_060 Hb_009178_010 Hb_009178_010 Hb_003925_060--Hb_009178_010 Hb_001396_070 Hb_001396_070 Hb_003925_060--Hb_001396_070 Hb_000640_190 Hb_000640_190 Hb_003925_060--Hb_000640_190 Hb_002249_020 Hb_002249_020 Hb_003925_060--Hb_002249_020 Hb_001277_340 Hb_001277_340 Hb_003925_060--Hb_001277_340 Hb_002686_410 Hb_002686_410 Hb_003925_060--Hb_002686_410 Hb_004718_060 Hb_004718_060 Hb_009178_010--Hb_004718_060 Hb_000260_760 Hb_000260_760 Hb_009178_010--Hb_000260_760 Hb_009178_010--Hb_002686_410 Hb_000034_110 Hb_000034_110 Hb_009178_010--Hb_000034_110 Hb_000030_140 Hb_000030_140 Hb_009178_010--Hb_000030_140 Hb_000956_040 Hb_000956_040 Hb_009178_010--Hb_000956_040 Hb_001396_070--Hb_000640_190 Hb_033152_090 Hb_033152_090 Hb_001396_070--Hb_033152_090 Hb_000603_190 Hb_000603_190 Hb_001396_070--Hb_000603_190 Hb_011930_100 Hb_011930_100 Hb_001396_070--Hb_011930_100 Hb_002248_130 Hb_002248_130 Hb_001396_070--Hb_002248_130 Hb_000640_190--Hb_033152_090 Hb_005403_010 Hb_005403_010 Hb_000640_190--Hb_005403_010 Hb_001009_120 Hb_001009_120 Hb_000640_190--Hb_001009_120 Hb_000640_190--Hb_002249_020 Hb_000300_550 Hb_000300_550 Hb_000640_190--Hb_000300_550 Hb_000045_160 Hb_000045_160 Hb_000640_190--Hb_000045_160 Hb_006846_170 Hb_006846_170 Hb_002249_020--Hb_006846_170 Hb_003449_100 Hb_003449_100 Hb_002249_020--Hb_003449_100 Hb_006022_010 Hb_006022_010 Hb_002249_020--Hb_006022_010 Hb_003228_100 Hb_003228_100 Hb_002249_020--Hb_003228_100 Hb_000562_070 Hb_000562_070 Hb_001277_340--Hb_000562_070 Hb_002600_070 Hb_002600_070 Hb_001277_340--Hb_002600_070 Hb_009158_060 Hb_009158_060 Hb_001277_340--Hb_009158_060 Hb_005305_130 Hb_005305_130 Hb_001277_340--Hb_005305_130 Hb_000155_170 Hb_000155_170 Hb_001277_340--Hb_000155_170 Hb_005885_030 Hb_005885_030 Hb_002686_410--Hb_005885_030 Hb_000270_700 Hb_000270_700 Hb_002686_410--Hb_000270_700 Hb_002686_410--Hb_000034_110 Hb_002686_410--Hb_009158_060 Hb_002686_410--Hb_000030_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.55185 5.9334 7.99214 4.17115 2.72756 2.29631
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.29705 1.83095 1.14877 2.11092 5.03585

CAGE analysis